miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19861 5' -51.4 NC_004687.1 + 112570 0.66 0.990732
Target:  5'- cUGGuccAGGCuGGCGc-CCUUCUGCAg-- -3'
miRNA:   3'- -ACCu--UCUG-CCGCuaGGAAGACGUaac -5'
19861 5' -51.4 NC_004687.1 + 104853 0.66 0.989412
Target:  5'- cGG-AGACGGCG-UCCcUCgaaggGCAUg- -3'
miRNA:   3'- aCCuUCUGCCGCuAGGaAGa----CGUAac -5'
19861 5' -51.4 NC_004687.1 + 131306 0.66 0.987796
Target:  5'- cUGGccGACGGCG-UCCUUgaccuggCUGCGg-- -3'
miRNA:   3'- -ACCuuCUGCCGCuAGGAA-------GACGUaac -5'
19861 5' -51.4 NC_004687.1 + 141047 0.66 0.984564
Target:  5'- aGcGggGAUGGCGAaggucUCCUgggcguUCUGC-UUGa -3'
miRNA:   3'- aC-CuuCUGCCGCU-----AGGA------AGACGuAAC- -5'
19861 5' -51.4 NC_004687.1 + 39463 0.67 0.982621
Target:  5'- cGGGugcuccCGGCGAUCCUgCUGCcggUGg -3'
miRNA:   3'- aCCUucu---GCCGCUAGGAaGACGua-AC- -5'
19861 5' -51.4 NC_004687.1 + 102408 0.67 0.982621
Target:  5'- aGGccguGGGCGGUGGUCUUUUUGgCGUa- -3'
miRNA:   3'- aCCu---UCUGCCGCUAGGAAGAC-GUAac -5'
19861 5' -51.4 NC_004687.1 + 145335 0.67 0.982621
Target:  5'- aUGGcc-ACGGCGGUcgcggCCUUCUGCugGUUGa -3'
miRNA:   3'- -ACCuucUGCCGCUA-----GGAAGACG--UAAC- -5'
19861 5' -51.4 NC_004687.1 + 42987 0.67 0.978189
Target:  5'- aGGAGGACGGCGcccCCgaCUGgCAUc- -3'
miRNA:   3'- aCCUUCUGCCGCua-GGaaGAC-GUAac -5'
19861 5' -51.4 NC_004687.1 + 28577 0.67 0.972972
Target:  5'- -uGAAGACGGC--UCCUgguUCUGCAg-- -3'
miRNA:   3'- acCUUCUGCCGcuAGGA---AGACGUaac -5'
19861 5' -51.4 NC_004687.1 + 23985 0.68 0.97005
Target:  5'- gGGcGGACGGUGuAUCgCUUCgaacuggcggGCAUUGg -3'
miRNA:   3'- aCCuUCUGCCGC-UAG-GAAGa---------CGUAAC- -5'
19861 5' -51.4 NC_004687.1 + 101385 0.68 0.965923
Target:  5'- cUGGAAGuCGuCGAuccacaugagcugcUCCUUCUGCGUg- -3'
miRNA:   3'- -ACCUUCuGCcGCU--------------AGGAAGACGUAac -5'
19861 5' -51.4 NC_004687.1 + 5479 0.69 0.952025
Target:  5'- -cGAGGACGGCGAcgUCUUCUGgGc-- -3'
miRNA:   3'- acCUUCUGCCGCUa-GGAAGACgUaac -5'
19861 5' -51.4 NC_004687.1 + 90790 0.7 0.916409
Target:  5'- cGGAAGACGuugucaGCGaAUCCgcagCUGUGUUGg -3'
miRNA:   3'- aCCUUCUGC------CGC-UAGGaa--GACGUAAC- -5'
19861 5' -51.4 NC_004687.1 + 15792 0.7 0.901973
Target:  5'- cGGGAGAcCGGCGGucagagcgagcgcaUCCaUCUGCGcUGg -3'
miRNA:   3'- aCCUUCU-GCCGCU--------------AGGaAGACGUaAC- -5'
19861 5' -51.4 NC_004687.1 + 80814 0.71 0.89045
Target:  5'- cUGGAAGGCGGCGAUgCgaUUgaGCgGUUGg -3'
miRNA:   3'- -ACCUUCUGCCGCUAgG--AAgaCG-UAAC- -5'
19861 5' -51.4 NC_004687.1 + 6709 0.71 0.868411
Target:  5'- aGGAagcgcGGAUGGCGAUCCgagaUCUGUg--- -3'
miRNA:   3'- aCCU-----UCUGCCGCUAGGa---AGACGuaac -5'
19861 5' -51.4 NC_004687.1 + 99238 0.78 0.532634
Target:  5'- cGGc-GAUGGUGGUCCUUCUGCAg-- -3'
miRNA:   3'- aCCuuCUGCCGCUAGGAAGACGUaac -5'
19861 5' -51.4 NC_004687.1 + 56717 1.08 0.008663
Target:  5'- cUGGAAGACGGCGAUCCUUCUGCAUUGc -3'
miRNA:   3'- -ACCUUCUGCCGCUAGGAAGACGUAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.