miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19862 3' -51.3 NC_004687.1 + 82418 0.66 0.994351
Target:  5'- gCCU-GCGCaGGaauGUCGAACGCGaGUCg -3'
miRNA:   3'- gGGAuCGCG-CU---UAGCUUGUGCgUAGa -5'
19862 3' -51.3 NC_004687.1 + 29800 0.66 0.994351
Target:  5'- aCCUcgUAGCuCGggUCGAGCACGg---- -3'
miRNA:   3'- -GGG--AUCGcGCuuAGCUUGUGCguaga -5'
19862 3' -51.3 NC_004687.1 + 84210 0.66 0.994351
Target:  5'- gCUCUGGCGCuGAAUCGGcaucgacaugGCuACGCcccGUCa -3'
miRNA:   3'- -GGGAUCGCG-CUUAGCU----------UG-UGCG---UAGa -5'
19862 3' -51.3 NC_004687.1 + 123558 0.66 0.994351
Target:  5'- uCUCgcuGUGCGGAUCGAAgGcCGCGUa- -3'
miRNA:   3'- -GGGau-CGCGCUUAGCUUgU-GCGUAga -5'
19862 3' -51.3 NC_004687.1 + 43640 0.66 0.994351
Target:  5'- aUCUUGGCGaUGaAGUCGAACAUGUcgCc -3'
miRNA:   3'- -GGGAUCGC-GC-UUAGCUUGUGCGuaGa -5'
19862 3' -51.3 NC_004687.1 + 2942 0.66 0.994351
Target:  5'- gCCCUGGUGggcuuCGAcgUGGACucgUGCGUCUg -3'
miRNA:   3'- -GGGAUCGC-----GCUuaGCUUGu--GCGUAGA- -5'
19862 3' -51.3 NC_004687.1 + 72424 0.66 0.993833
Target:  5'- gCCCUGGCGgGAcUCGgucauuccgggcacgGugACGCAcCUg -3'
miRNA:   3'- -GGGAUCGCgCUuAGC---------------UugUGCGUaGA- -5'
19862 3' -51.3 NC_004687.1 + 3124 0.66 0.99356
Target:  5'- gCCCguacuucgagcAGCGCGAuggccguugggagcUGAGCugGCAUCUg -3'
miRNA:   3'- -GGGa----------UCGCGCUua------------GCUUGugCGUAGA- -5'
19862 3' -51.3 NC_004687.1 + 17710 0.66 0.993467
Target:  5'- gCCCgAGCGCGAcGUCGGGCA-GUuggCUg -3'
miRNA:   3'- -GGGaUCGCGCU-UAGCUUGUgCGua-GA- -5'
19862 3' -51.3 NC_004687.1 + 29966 0.66 0.993467
Target:  5'- aCCUAcGCGCu-GUCG-GCGCGguUCUg -3'
miRNA:   3'- gGGAU-CGCGcuUAGCuUGUGCguAGA- -5'
19862 3' -51.3 NC_004687.1 + 16380 0.66 0.993467
Target:  5'- gCCgacGCGCGAggUGAGCGCGgugaCGUCg -3'
miRNA:   3'- gGGau-CGCGCUuaGCUUGUGC----GUAGa -5'
19862 3' -51.3 NC_004687.1 + 137099 0.66 0.992476
Target:  5'- gCCC-AGCGCGAucgCGAGC-UGCcgGUCg -3'
miRNA:   3'- -GGGaUCGCGCUua-GCUUGuGCG--UAGa -5'
19862 3' -51.3 NC_004687.1 + 122596 0.66 0.992476
Target:  5'- aCCgugGGCGgGAuUCGAACcCGCAa-- -3'
miRNA:   3'- gGGa--UCGCgCUuAGCUUGuGCGUaga -5'
19862 3' -51.3 NC_004687.1 + 16660 0.66 0.992476
Target:  5'- gCCUUGGUgGCGAcgagGUCGGACAgGUcgCUc -3'
miRNA:   3'- -GGGAUCG-CGCU----UAGCUUGUgCGuaGA- -5'
19862 3' -51.3 NC_004687.1 + 7407 0.66 0.992476
Target:  5'- aCCaAGCGCGc--CGccGCGCGCGUCa -3'
miRNA:   3'- gGGaUCGCGCuuaGCu-UGUGCGUAGa -5'
19862 3' -51.3 NC_004687.1 + 149442 0.66 0.992371
Target:  5'- aCCCUuGCGCcuggucgagauagGAAUCGAGCAC-CcUCUu -3'
miRNA:   3'- -GGGAuCGCG-------------CUUAGCUUGUGcGuAGA- -5'
19862 3' -51.3 NC_004687.1 + 10867 0.66 0.990136
Target:  5'- aCCUggAGUGCGGuagAUCGAACGCGaggCg -3'
miRNA:   3'- gGGA--UCGCGCU---UAGCUUGUGCguaGa -5'
19862 3' -51.3 NC_004687.1 + 100687 0.66 0.990136
Target:  5'- gCCUuGCGgGGAUCGAGCA-GC-UCg -3'
miRNA:   3'- gGGAuCGCgCUUAGCUUGUgCGuAGa -5'
19862 3' -51.3 NC_004687.1 + 91754 0.66 0.989741
Target:  5'- gCCUGGCGCucGcCGGggaacugggcccagACGCGCAUCc -3'
miRNA:   3'- gGGAUCGCGcuUaGCU--------------UGUGCGUAGa -5'
19862 3' -51.3 NC_004687.1 + 66573 0.67 0.98877
Target:  5'- aCCgaccGGCGCGAcuacgccgAUCGGugGCGCGCGgugCUg -3'
miRNA:   3'- gGGa---UCGCGCU--------UAGCU--UGUGCGUa--GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.