miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19862 5' -52.4 NC_004687.1 + 26435 0.66 0.985861
Target:  5'- cUGGACCGcugccagcGCaGUCGUAUCCGggcGACg -3'
miRNA:   3'- cAUCUGGC--------CG-CAGUAUAGGCaacCUG- -5'
19862 5' -52.4 NC_004687.1 + 67659 0.66 0.985861
Target:  5'- cGUAGACC-GCGUU--GUCCaGgguggUGGACg -3'
miRNA:   3'- -CAUCUGGcCGCAGuaUAGG-Ca----ACCUG- -5'
19862 5' -52.4 NC_004687.1 + 122176 0.66 0.984066
Target:  5'- ---aGCCGGaGUCAUcgCCGUccucgaaguUGGACu -3'
miRNA:   3'- caucUGGCCgCAGUAuaGGCA---------ACCUG- -5'
19862 5' -52.4 NC_004687.1 + 90520 0.66 0.984066
Target:  5'- aUAGACC-GCGUCcUGUCCGccgUUGGugACg -3'
miRNA:   3'- cAUCUGGcCGCAGuAUAGGC---AACC--UG- -5'
19862 5' -52.4 NC_004687.1 + 88949 0.66 0.984066
Target:  5'- --cGACCGGCGcccugCcgAUCCG--GGGCa -3'
miRNA:   3'- cauCUGGCCGCa----GuaUAGGCaaCCUG- -5'
19862 5' -52.4 NC_004687.1 + 137780 0.66 0.97764
Target:  5'- -cGGcACCGGUGUCGUugaUGUUGaGACg -3'
miRNA:   3'- caUC-UGGCCGCAGUAuagGCAAC-CUG- -5'
19862 5' -52.4 NC_004687.1 + 136825 0.66 0.976906
Target:  5'- -gGGACUGGUgacgGUCAUcagggacgcacccaGUCCG-UGGGCa -3'
miRNA:   3'- caUCUGGCCG----CAGUA--------------UAGGCaACCUG- -5'
19862 5' -52.4 NC_004687.1 + 129393 0.66 0.975384
Target:  5'- cGUGGACCGGCacGUCGUAcuugguggccaggugCUGccGGACg -3'
miRNA:   3'- -CAUCUGGCCG--CAGUAUa--------------GGCaaCCUG- -5'
19862 5' -52.4 NC_004687.1 + 99594 0.66 0.975124
Target:  5'- -gAGcCCGGCG-CAgGUCCGgguccGGACg -3'
miRNA:   3'- caUCuGGCCGCaGUaUAGGCaa---CCUG- -5'
19862 5' -52.4 NC_004687.1 + 68116 0.67 0.969481
Target:  5'- -aGGACCGG-GUU--GUCCGgcGGGCc -3'
miRNA:   3'- caUCUGGCCgCAGuaUAGGCaaCCUG- -5'
19862 5' -52.4 NC_004687.1 + 24270 0.67 0.966341
Target:  5'- -cAGGCUGGUGcCGguggCCGUcaUGGACa -3'
miRNA:   3'- caUCUGGCCGCaGUaua-GGCA--ACCUG- -5'
19862 5' -52.4 NC_004687.1 + 30979 0.67 0.96298
Target:  5'- uGUAGGCCGGUGUgGUGUaggCGUUGu-- -3'
miRNA:   3'- -CAUCUGGCCGCAgUAUAg--GCAACcug -5'
19862 5' -52.4 NC_004687.1 + 92523 0.67 0.96298
Target:  5'- -cGGACCugguGCGUCAUGcCCGgucGGGCg -3'
miRNA:   3'- caUCUGGc---CGCAGUAUaGGCaa-CCUG- -5'
19862 5' -52.4 NC_004687.1 + 50456 0.67 0.962632
Target:  5'- cGUAGGCCGcGCGcCGgAUCgcggcguUGUUGGGCg -3'
miRNA:   3'- -CAUCUGGC-CGCaGUaUAG-------GCAACCUG- -5'
19862 5' -52.4 NC_004687.1 + 57023 0.67 0.959392
Target:  5'- --uGACCGGgGUC---UCCGggcUGGGCg -3'
miRNA:   3'- cauCUGGCCgCAGuauAGGCa--ACCUG- -5'
19862 5' -52.4 NC_004687.1 + 121221 0.68 0.955571
Target:  5'- -aGGACCGGCGUCcuccaggCCaUUGGGg -3'
miRNA:   3'- caUCUGGCCGCAGuaua---GGcAACCUg -5'
19862 5' -52.4 NC_004687.1 + 36196 0.68 0.947216
Target:  5'- ---cGCCgGGCGUCAUGUaCCGgcGGAa -3'
miRNA:   3'- caucUGG-CCGCAGUAUA-GGCaaCCUg -5'
19862 5' -52.4 NC_004687.1 + 152235 0.68 0.947216
Target:  5'- aUAGACCGGCucGUCGagUAUCCcgGUggccaGGACg -3'
miRNA:   3'- cAUCUGGCCG--CAGU--AUAGG--CAa----CCUG- -5'
19862 5' -52.4 NC_004687.1 + 142963 0.68 0.942673
Target:  5'- -cAGGCCuGCGaUCuacgGUUCGUUGGACc -3'
miRNA:   3'- caUCUGGcCGC-AGua--UAGGCAACCUG- -5'
19862 5' -52.4 NC_004687.1 + 140795 0.68 0.937884
Target:  5'- --cGACCGGCGUCAacaccAUCuCGgUGGAg -3'
miRNA:   3'- cauCUGGCCGCAGUa----UAG-GCaACCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.