miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19866 3' -61.8 NC_004687.1 + 109831 0.66 0.649089
Target:  5'- -uGGCUG-GCGCcgccaCCCGAGCUGgacaugaugGCCu -3'
miRNA:   3'- acCCGACuCGUG-----GGGCUCGACa--------CGGu -5'
19866 3' -61.8 NC_004687.1 + 70845 0.66 0.649089
Target:  5'- uUGGGCUgccagcccacGAGCAgCCCC-AGCcgGUGaCCAc -3'
miRNA:   3'- -ACCCGA----------CUCGU-GGGGcUCGa-CAC-GGU- -5'
19866 3' -61.8 NC_004687.1 + 40028 0.66 0.643106
Target:  5'- cUGGcGUUGAGCGCCUgcugcucaGGGCUGaccggguugaugaacUGCCAg -3'
miRNA:   3'- -ACC-CGACUCGUGGGg-------CUCGAC---------------ACGGU- -5'
19866 3' -61.8 NC_004687.1 + 93869 0.66 0.639115
Target:  5'- gGGGUUGuuGGCGCCCC-AGU--UGCCGu -3'
miRNA:   3'- aCCCGAC--UCGUGGGGcUCGacACGGU- -5'
19866 3' -61.8 NC_004687.1 + 32583 0.66 0.629137
Target:  5'- aGGGC--GGCAgCCCGAcGCUGcUGCgCAc -3'
miRNA:   3'- aCCCGacUCGUgGGGCU-CGAC-ACG-GU- -5'
19866 3' -61.8 NC_004687.1 + 84481 0.66 0.629137
Target:  5'- aGcGCgUGAGCACCCCGuGCUGgGUUu -3'
miRNA:   3'- aCcCG-ACUCGUGGGGCuCGACaCGGu -5'
19866 3' -61.8 NC_004687.1 + 126988 0.66 0.629137
Target:  5'- aGGGCUGcccAGCGCCaCGAGCgcgaGUGaCAu -3'
miRNA:   3'- aCCCGAC---UCGUGGgGCUCGa---CACgGU- -5'
19866 3' -61.8 NC_004687.1 + 143620 0.66 0.629137
Target:  5'- aGGGCgGAcgucUugCCCGAGCUgacgGUGCCc -3'
miRNA:   3'- aCCCGaCUc---GugGGGCUCGA----CACGGu -5'
19866 3' -61.8 NC_004687.1 + 130640 0.66 0.61916
Target:  5'- aGGGCUGGacGCACgCCGAcguGCUGcGCa- -3'
miRNA:   3'- aCCCGACU--CGUGgGGCU---CGACaCGgu -5'
19866 3' -61.8 NC_004687.1 + 78655 0.66 0.618163
Target:  5'- cGGGCUGAuGUugaugACCCCGGccucuucGUUG-GCCAg -3'
miRNA:   3'- aCCCGACU-CG-----UGGGGCU-------CGACaCGGU- -5'
19866 3' -61.8 NC_004687.1 + 69460 0.66 0.609194
Target:  5'- gGGGU--AGUugUCCGGGCUGUcgGCCu -3'
miRNA:   3'- aCCCGacUCGugGGGCUCGACA--CGGu -5'
19866 3' -61.8 NC_004687.1 + 104943 0.66 0.609194
Target:  5'- gGGGCcgGGGCACCCgUGAGCgaaccUGCgAa -3'
miRNA:   3'- aCCCGa-CUCGUGGG-GCUCGac---ACGgU- -5'
19866 3' -61.8 NC_004687.1 + 63194 0.66 0.599243
Target:  5'- aGGGC-GAGC-CgCC--GCUGUGCCAg -3'
miRNA:   3'- aCCCGaCUCGuGgGGcuCGACACGGU- -5'
19866 3' -61.8 NC_004687.1 + 51947 0.66 0.599243
Target:  5'- aGGGCUGGGuCAUggaCGAGCUG-GUCGg -3'
miRNA:   3'- aCCCGACUC-GUGgg-GCUCGACaCGGU- -5'
19866 3' -61.8 NC_004687.1 + 33944 0.66 0.589315
Target:  5'- cGGGCacGAcuuCACCCCGGGUggugacucggGUGCCGa -3'
miRNA:   3'- aCCCGa-CUc--GUGGGGCUCGa---------CACGGU- -5'
19866 3' -61.8 NC_004687.1 + 21345 0.66 0.589315
Target:  5'- aGGGCgaucugGAGCGCCauuCGGGCgugGCCc -3'
miRNA:   3'- aCCCGa-----CUCGUGGg--GCUCGacaCGGu -5'
19866 3' -61.8 NC_004687.1 + 60976 0.66 0.589315
Target:  5'- aGGGCUGcuGC-CUCCGguccuGGCUGgaugGCCAg -3'
miRNA:   3'- aCCCGACu-CGuGGGGC-----UCGACa---CGGU- -5'
19866 3' -61.8 NC_004687.1 + 54077 0.66 0.589315
Target:  5'- aGGGuCUGAGCcggGCCCCGcacuacCUG-GCCAu -3'
miRNA:   3'- aCCC-GACUCG---UGGGGCuc----GACaCGGU- -5'
19866 3' -61.8 NC_004687.1 + 90744 0.67 0.579417
Target:  5'- cGGGCUGuaaACCaggggacuccagCCGGGCUG-GCCAu -3'
miRNA:   3'- aCCCGACucgUGG------------GGCUCGACaCGGU- -5'
19866 3' -61.8 NC_004687.1 + 44768 0.67 0.579417
Target:  5'- cGGGCcagccGGGCaacaacACCCCG-GCUGcGCCGg -3'
miRNA:   3'- aCCCGa----CUCG------UGGGGCuCGACaCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.