miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19866 5' -51.8 NC_004687.1 + 111137 0.66 0.991016
Target:  5'- -cUGGCCAAGGccuacugCGAGgcGCUgCGGCGc -3'
miRNA:   3'- gaGCCGGUUCUa------GCUCuaCGA-GUUGC- -5'
19866 5' -51.8 NC_004687.1 + 110213 0.66 0.991016
Target:  5'- aCUCGGUCGA---CGGGGUGaacuUCAGCGg -3'
miRNA:   3'- -GAGCCGGUUcuaGCUCUACg---AGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 151811 0.66 0.991016
Target:  5'- aUCGuCuCGGGGUCGAGGUaCUCGAUGg -3'
miRNA:   3'- gAGCcG-GUUCUAGCUCUAcGAGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 126028 0.66 0.991016
Target:  5'- aCUCGGUCA---UCGAGAcGaUCAACGa -3'
miRNA:   3'- -GAGCCGGUucuAGCUCUaCgAGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 28235 0.66 0.991016
Target:  5'- -gCGGCgCcAGAUCGA---GCUCGGCGa -3'
miRNA:   3'- gaGCCG-GuUCUAGCUcuaCGAGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 80623 0.66 0.991016
Target:  5'- -gCGGCCAAGc-CGAucaGCUCGGCGa -3'
miRNA:   3'- gaGCCGGUUCuaGCUcuaCGAGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 76309 0.66 0.989742
Target:  5'- aUCGGgCAGGcgagCGAGAUcCUCAACc -3'
miRNA:   3'- gAGCCgGUUCua--GCUCUAcGAGUUGc -5'
19866 5' -51.8 NC_004687.1 + 141138 0.66 0.989742
Target:  5'- -cUGGCUcAGcgUGGGGUGCcCAACGg -3'
miRNA:   3'- gaGCCGGuUCuaGCUCUACGaGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 64321 0.66 0.989742
Target:  5'- uUCGGCCAgcuGGAUCaAGGccagUGC-CGACGc -3'
miRNA:   3'- gAGCCGGU---UCUAGcUCU----ACGaGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 9062 0.66 0.989742
Target:  5'- -cCGGCCAcAGAagcUCG-GGUGCaCGACGa -3'
miRNA:   3'- gaGCCGGU-UCU---AGCuCUACGaGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 132115 0.66 0.989742
Target:  5'- gUUGGUCGGGAcgaccacgUCGAGcuucuggGCUCGGCGc -3'
miRNA:   3'- gAGCCGGUUCU--------AGCUCua-----CGAGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 130786 0.66 0.988332
Target:  5'- -cCGGaUCGGGAUCGAaGAUGUUCucCGa -3'
miRNA:   3'- gaGCC-GGUUCUAGCU-CUACGAGuuGC- -5'
19866 5' -51.8 NC_004687.1 + 134811 0.66 0.988332
Target:  5'- -cUGGCCGGGcuuGUCGccgGGGUGCUCA-CGc -3'
miRNA:   3'- gaGCCGGUUC---UAGC---UCUACGAGUuGC- -5'
19866 5' -51.8 NC_004687.1 + 332 0.66 0.988332
Target:  5'- aUCGGCCu-GAUCGGGuggGUGCacgaGACGc -3'
miRNA:   3'- gAGCCGGuuCUAGCUC---UACGag--UUGC- -5'
19866 5' -51.8 NC_004687.1 + 152650 0.66 0.988332
Target:  5'- -gCGGCCcuGAUCGucgcGGUGCUUGAUc -3'
miRNA:   3'- gaGCCGGuuCUAGCu---CUACGAGUUGc -5'
19866 5' -51.8 NC_004687.1 + 114584 0.66 0.988332
Target:  5'- -cUGGUCGAcGUCGAGGUGgaCGGCa -3'
miRNA:   3'- gaGCCGGUUcUAGCUCUACgaGUUGc -5'
19866 5' -51.8 NC_004687.1 + 131075 0.66 0.988332
Target:  5'- -cCGGUCGGGGUCGGuGAUGUccugcaCGGCGg -3'
miRNA:   3'- gaGCCGGUUCUAGCU-CUACGa-----GUUGC- -5'
19866 5' -51.8 NC_004687.1 + 104853 0.66 0.986776
Target:  5'- gUCGGCCAcguAGucGUCG-GAUGcCUUGGCGa -3'
miRNA:   3'- gAGCCGGU---UC--UAGCuCUAC-GAGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 22424 0.66 0.986776
Target:  5'- --aGGCCAAGAgccaUCGAGcgcGC-CGACGg -3'
miRNA:   3'- gagCCGGUUCU----AGCUCua-CGaGUUGC- -5'
19866 5' -51.8 NC_004687.1 + 64590 0.66 0.986776
Target:  5'- -cCGGCCc-GAccggUGAGGUGCUCAuCGg -3'
miRNA:   3'- gaGCCGGuuCUa---GCUCUACGAGUuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.