miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1987 5' -57.3 NC_001347.2 + 155573 0.66 0.929196
Target:  5'- cGCGGCUGgUACGAGcGGugggcuCGAGGGGGGa -3'
miRNA:   3'- uUGUUGGCgGUGCUC-CU------GCUCCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 15617 0.66 0.929196
Target:  5'- uGACGACgCGUucgucgacgCGCGAGGGCGcGGAGcGGg -3'
miRNA:   3'- -UUGUUG-GCG---------GUGCUCCUGCuCCUC-CU- -5'
1987 5' -57.3 NC_001347.2 + 19158 0.66 0.929196
Target:  5'- cGAUAGCaGCgACGAGGACGAGaGcGGc -3'
miRNA:   3'- -UUGUUGgCGgUGCUCCUGCUC-CuCCu -5'
1987 5' -57.3 NC_001347.2 + 88362 0.66 0.924034
Target:  5'- uGGCGgcGCUGCCGCGAGacGACGuGGAcGGc -3'
miRNA:   3'- -UUGU--UGGCGGUGCUC--CUGCuCCU-CCu -5'
1987 5' -57.3 NC_001347.2 + 58193 0.66 0.918648
Target:  5'- --aAGuuGCCccaGAGGAaGAGGAGGAu -3'
miRNA:   3'- uugUUggCGGug-CUCCUgCUCCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 113148 0.67 0.901156
Target:  5'- -uCGACUggagGCgACGGGGACGAaGAGGGa -3'
miRNA:   3'- uuGUUGG----CGgUGCUCCUGCUcCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 152394 0.67 0.898674
Target:  5'- cGACGGCggguggagaugagGCgGCGuggacuGGGACGAGGAGGAg -3'
miRNA:   3'- -UUGUUGg------------CGgUGC------UCCUGCUCCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 173831 0.67 0.888401
Target:  5'- --gGGCgGCgGCgGAGGAgGAGGAGGc -3'
miRNA:   3'- uugUUGgCGgUG-CUCCUgCUCCUCCu -5'
1987 5' -57.3 NC_001347.2 + 17348 0.67 0.888401
Target:  5'- uGGCcGCCgGCCACGAGagcgaugacGACGAGuGGGAa -3'
miRNA:   3'- -UUGuUGG-CGGUGCUC---------CUGCUCcUCCU- -5'
1987 5' -57.3 NC_001347.2 + 77078 0.67 0.888401
Target:  5'- cGGCAGCgGCgGCagaaGAGGAgGcGGAGGAg -3'
miRNA:   3'- -UUGUUGgCGgUG----CUCCUgCuCCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 13401 0.67 0.881704
Target:  5'- --gGAUC-CCugGAGGGCGucGAGGAa -3'
miRNA:   3'- uugUUGGcGGugCUCCUGCucCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 170204 0.67 0.881023
Target:  5'- -cCGGCCGgCGCGAccaggauggagcuGGAcaguguCGAGGAGGAg -3'
miRNA:   3'- uuGUUGGCgGUGCU-------------CCU------GCUCCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 107418 0.67 0.88034
Target:  5'- ---uACCGCCACGcuccggcgcggcGGACGAGGGacuGGAg -3'
miRNA:   3'- uuguUGGCGGUGCu-----------CCUGCUCCU---CCU- -5'
1987 5' -57.3 NC_001347.2 + 111311 0.67 0.8748
Target:  5'- gGAUuACCacCCAcCGAGGAaGAGGAGGAa -3'
miRNA:   3'- -UUGuUGGc-GGU-GCUCCUgCUCCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 130403 0.67 0.874098
Target:  5'- cGACAACCGCCAgcaaccacgccacUGccGGcggacaacaGCGGGGAGGAg -3'
miRNA:   3'- -UUGUUGGCGGU-------------GCu-CC---------UGCUCCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 52056 0.67 0.867692
Target:  5'- --gGACUGggACGAGGAgGAGGAGGc -3'
miRNA:   3'- uugUUGGCggUGCUCCUgCUCCUCCu -5'
1987 5' -57.3 NC_001347.2 + 12124 0.67 0.867692
Target:  5'- --gGGCCGCgGuccucuucUGAGGACGAGGAcucGGAc -3'
miRNA:   3'- uugUUGGCGgU--------GCUCCUGCUCCU---CCU- -5'
1987 5' -57.3 NC_001347.2 + 58099 0.68 0.860386
Target:  5'- aGugAGCagaGUgAUGAGGAaGAGGAGGAg -3'
miRNA:   3'- -UugUUGg--CGgUGCUCCUgCUCCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 228723 0.68 0.860386
Target:  5'- cGCcACCGCCGCGGcGGauuuccGCGcGGGGGAc -3'
miRNA:   3'- uUGuUGGCGGUGCU-CC------UGCuCCUCCU- -5'
1987 5' -57.3 NC_001347.2 + 38004 0.68 0.860386
Target:  5'- cAGCAGCCGCCGCGcGGccuCGGcGGcGGGc -3'
miRNA:   3'- -UUGUUGGCGGUGCuCCu--GCU-CCuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.