miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19870 5' -46.9 NC_004687.1 + 101843 0.66 0.999955
Target:  5'- aGGUAGUG-CGggGcCCGGCUCa----- -3'
miRNA:   3'- -CCAUCAUaGCuuU-GGUCGGGcuuaac -5'
19870 5' -46.9 NC_004687.1 + 50932 0.66 0.999955
Target:  5'- gGGUGacGUCGAGACgGGCCuCGAu--- -3'
miRNA:   3'- -CCAUcaUAGCUUUGgUCGG-GCUuaac -5'
19870 5' -46.9 NC_004687.1 + 117586 0.66 0.999947
Target:  5'- cGG-AGaUGUCGAGGCCgucguucugcaucgcGGCCUGGAUg- -3'
miRNA:   3'- -CCaUC-AUAGCUUUGG---------------UCGGGCUUAac -5'
19870 5' -46.9 NC_004687.1 + 88159 0.66 0.99994
Target:  5'- cGGUGGUugccGUCGGAcaGCCaggcgugcGGCCCGuuggUGa -3'
miRNA:   3'- -CCAUCA----UAGCUU--UGG--------UCGGGCuua-AC- -5'
19870 5' -46.9 NC_004687.1 + 2655 0.66 0.99994
Target:  5'- cGUGGUGUCGAAuCCGGCgUCGu---- -3'
miRNA:   3'- cCAUCAUAGCUUuGGUCG-GGCuuaac -5'
19870 5' -46.9 NC_004687.1 + 108483 0.66 0.99994
Target:  5'- gGGUGGgcaGUCGgcAgCGGUCCGAAc-- -3'
miRNA:   3'- -CCAUCa--UAGCuuUgGUCGGGCUUaac -5'
19870 5' -46.9 NC_004687.1 + 111094 0.66 0.99994
Target:  5'- uGGgAGUGUUGGuccccGCCGGUCCGGccagGUUGu -3'
miRNA:   3'- -CCaUCAUAGCUu----UGGUCGGGCU----UAAC- -5'
19870 5' -46.9 NC_004687.1 + 131710 0.66 0.99994
Target:  5'- -----cGUCGAGACCGGCCaGGAUc- -3'
miRNA:   3'- ccaucaUAGCUUUGGUCGGgCUUAac -5'
19870 5' -46.9 NC_004687.1 + 5294 0.66 0.99994
Target:  5'- --aGGUGUCGA--CCGGgCCGAAcUGa -3'
miRNA:   3'- ccaUCAUAGCUuuGGUCgGGCUUaAC- -5'
19870 5' -46.9 NC_004687.1 + 50318 0.66 0.99994
Target:  5'- cGGUAGUAcucgCGggGCC-GCaCUGAAg-- -3'
miRNA:   3'- -CCAUCAUa---GCuuUGGuCG-GGCUUaac -5'
19870 5' -46.9 NC_004687.1 + 10605 0.66 0.99994
Target:  5'- cGUGGccAUCGAGaagcaggccacgGCCAGCgCCGAAUc- -3'
miRNA:   3'- cCAUCa-UAGCUU------------UGGUCG-GGCUUAac -5'
19870 5' -46.9 NC_004687.1 + 47570 0.66 0.999921
Target:  5'- cGGcGGUGcCGGAGCCAGCgCUGGu--- -3'
miRNA:   3'- -CCaUCAUaGCUUUGGUCG-GGCUuaac -5'
19870 5' -46.9 NC_004687.1 + 40867 0.66 0.999921
Target:  5'- gGGUGGg--CGGu-CCGGCCUGAGc-- -3'
miRNA:   3'- -CCAUCauaGCUuuGGUCGGGCUUaac -5'
19870 5' -46.9 NC_004687.1 + 18572 0.66 0.999921
Target:  5'- cGGgAGUGUCGGAcaggUCAGUgcaCCGggUUGg -3'
miRNA:   3'- -CCaUCAUAGCUUu---GGUCG---GGCuuAAC- -5'
19870 5' -46.9 NC_004687.1 + 84109 0.66 0.999921
Target:  5'- cGGgGGcccugCGAGAUCAGCCCGGc--- -3'
miRNA:   3'- -CCaUCaua--GCUUUGGUCGGGCUuaac -5'
19870 5' -46.9 NC_004687.1 + 116311 0.66 0.999921
Target:  5'- cGGUucGUcGUCGAcaagGGCCuGCCCGAGg-- -3'
miRNA:   3'- -CCAu-CA-UAGCU----UUGGuCGGGCUUaac -5'
19870 5' -46.9 NC_004687.1 + 62976 0.66 0.999921
Target:  5'- cGGgcagGUCGAGACCAaGCCCa----- -3'
miRNA:   3'- -CCaucaUAGCUUUGGU-CGGGcuuaac -5'
19870 5' -46.9 NC_004687.1 + 123620 0.66 0.999919
Target:  5'- cGGUAGcccuucAUCGgcACCuucacccagccucGGCCUGAGUUGu -3'
miRNA:   3'- -CCAUCa-----UAGCuuUGG-------------UCGGGCUUAAC- -5'
19870 5' -46.9 NC_004687.1 + 127735 0.66 0.999919
Target:  5'- aGGUGGUGacggCGAGGCCgacggcaAGgCCGGAUa- -3'
miRNA:   3'- -CCAUCAUa---GCUUUGG-------UCgGGCUUAac -5'
19870 5' -46.9 NC_004687.1 + 6193 0.66 0.999896
Target:  5'- gGGUGGguccugGUCGugcgcgaccAGAUCGGCCCGGGc-- -3'
miRNA:   3'- -CCAUCa-----UAGC---------UUUGGUCGGGCUUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.