miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19871 5' -62.6 NC_004687.1 + 142730 0.66 0.650131
Target:  5'- aCCaUCCCggaCCCGGGCUUCCCcuauaUCCCGCu -3'
miRNA:   3'- gGG-AGGG---GGGUUUGGGGGG-----AGGGUGu -5'
19871 5' -62.6 NC_004687.1 + 137324 0.66 0.640415
Target:  5'- gCCUCCgCCCGgcaGAUCCCCaaCCCGg- -3'
miRNA:   3'- gGGAGGgGGGU---UUGGGGGgaGGGUgu -5'
19871 5' -62.6 NC_004687.1 + 5137 0.66 0.630692
Target:  5'- gCCCUUCCaCCgaucagccauCAGACCCUCaCUCCUGCc -3'
miRNA:   3'- -GGGAGGG-GG----------GUUUGGGGG-GAGGGUGu -5'
19871 5' -62.6 NC_004687.1 + 145654 0.66 0.630692
Target:  5'- gCCCUggagcaCCUgCCGGACCUCaCCUCgCGCAc -3'
miRNA:   3'- -GGGA------GGGgGGUUUGGGG-GGAGgGUGU- -5'
19871 5' -62.6 NC_004687.1 + 107112 0.66 0.630692
Target:  5'- aCCUCCUggCCCAGguGgCCCCgUCCgGCGc -3'
miRNA:   3'- gGGAGGG--GGGUU--UgGGGGgAGGgUGU- -5'
19871 5' -62.6 NC_004687.1 + 83516 0.66 0.630692
Target:  5'- aCCUUCaCCUCGGGCUCCag-CCCGCAg -3'
miRNA:   3'- gGGAGG-GGGGUUUGGGGggaGGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 47723 0.66 0.620971
Target:  5'- gCCCgcaggcgCUCgCCGAAagucaCCCCCUCCuCACGc -3'
miRNA:   3'- -GGGa------GGGgGGUUUg----GGGGGAGG-GUGU- -5'
19871 5' -62.6 NC_004687.1 + 133405 0.66 0.620971
Target:  5'- uCCCuagUCUCCCCGGuucgugcgcACUCCCCgguUCCCAUc -3'
miRNA:   3'- -GGG---AGGGGGGUU---------UGGGGGG---AGGGUGu -5'
19871 5' -62.6 NC_004687.1 + 112739 0.66 0.611257
Target:  5'- gCC-CCgCCCAGACcggCCCCCgcCCCACc -3'
miRNA:   3'- gGGaGGgGGGUUUG---GGGGGa-GGGUGu -5'
19871 5' -62.6 NC_004687.1 + 40995 0.66 0.611257
Target:  5'- cCCgCUCCUCCgAGGCguugcugacugCCCaCUCCCACAg -3'
miRNA:   3'- -GG-GAGGGGGgUUUG-----------GGGgGAGGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 44842 0.66 0.611257
Target:  5'- aCCaacaCUCCCAGcGCCaCCCCUCCCGg- -3'
miRNA:   3'- gGGag--GGGGGUU-UGG-GGGGAGGGUgu -5'
19871 5' -62.6 NC_004687.1 + 130396 0.66 0.611257
Target:  5'- uUCUCCCagaucaCCGAGCCgCCCUgggcgaccaCCCACu -3'
miRNA:   3'- gGGAGGGg-----GGUUUGGgGGGA---------GGGUGu -5'
19871 5' -62.6 NC_004687.1 + 20274 0.67 0.601558
Target:  5'- -aCUUCCUCCAGACCgUCCggaCCCAUg -3'
miRNA:   3'- ggGAGGGGGGUUUGGgGGGa--GGGUGu -5'
19871 5' -62.6 NC_004687.1 + 131802 0.67 0.601558
Target:  5'- aCCUCCCUCgGAGgCUCCgguCUCUCACGa -3'
miRNA:   3'- gGGAGGGGGgUUUgGGGG---GAGGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 88502 0.67 0.601558
Target:  5'- aCCggUCCCCCAGGCUcaucguUCUCUCCCAUc -3'
miRNA:   3'- gGGa-GGGGGGUUUGG------GGGGAGGGUGu -5'
19871 5' -62.6 NC_004687.1 + 128068 0.67 0.591879
Target:  5'- gCCCgggCCCgcaagggcaaCCCGgucgcgccGACCCCgCCUCCgGCAg -3'
miRNA:   3'- -GGGa--GGG----------GGGU--------UUGGGG-GGAGGgUGU- -5'
19871 5' -62.6 NC_004687.1 + 80430 0.67 0.591879
Target:  5'- aCCCguagUCCCCCCGGcgggcccaggcGCCCCggCCUCCaccgACGa -3'
miRNA:   3'- -GGG----AGGGGGGUU-----------UGGGG--GGAGGg---UGU- -5'
19871 5' -62.6 NC_004687.1 + 155928 0.67 0.591879
Target:  5'- uCCC-CCCCCC---CCCCCC-CCC--- -3'
miRNA:   3'- -GGGaGGGGGGuuuGGGGGGaGGGugu -5'
19871 5' -62.6 NC_004687.1 + 16541 0.68 0.543995
Target:  5'- aCCUUCgCCCAGGCCCgCgCCgcugCCCugGa -3'
miRNA:   3'- gGGAGGgGGGUUUGGG-G-GGa---GGGugU- -5'
19871 5' -62.6 NC_004687.1 + 59735 0.68 0.534558
Target:  5'- gCCCgagggCCCCUguAcCCuCCCCgUCCCGCGc -3'
miRNA:   3'- -GGGa----GGGGGguUuGG-GGGG-AGGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.