miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19871 5' -62.6 NC_004687.1 + 52094 1.09 0.000772
Target:  5'- cCCCUCCCCCCAAACCCCCCUCCCACAa -3'
miRNA:   3'- -GGGAGGGGGGUUUGGGGGGAGGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 44127 0.71 0.370513
Target:  5'- gCCUUaCCCCCGGACCCUgguggCCUUCCugGa -3'
miRNA:   3'- gGGAG-GGGGGUUUGGGG-----GGAGGGugU- -5'
19871 5' -62.6 NC_004687.1 + 34773 0.7 0.410359
Target:  5'- aCCgUCCCCgagCAGGCCCCCgagCUgCCACAg -3'
miRNA:   3'- -GGgAGGGGg--GUUUGGGGG---GAgGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 43926 0.7 0.427026
Target:  5'- aCCUUCaCCC-GGCCCUCCUgCCACAg -3'
miRNA:   3'- gGGAGGgGGGuUUGGGGGGAgGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 49340 0.69 0.461527
Target:  5'- uUCCagCCCuCCCGGGCCCgCCaUUCCACGc -3'
miRNA:   3'- -GGGa-GGG-GGGUUUGGGgGG-AGGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 149747 0.69 0.47038
Target:  5'- aCCCa--CCCCAcGCCCCagaugcUCUCCCGCAu -3'
miRNA:   3'- -GGGaggGGGGUuUGGGG------GGAGGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 91968 0.69 0.47932
Target:  5'- cCCCggcggggCCCCCuCGGGCCCCgCCUUCaCugAc -3'
miRNA:   3'- -GGGa------GGGGG-GUUUGGGG-GGAGG-GugU- -5'
19871 5' -62.6 NC_004687.1 + 16246 0.68 0.493793
Target:  5'- gCCCagCCCgCCUGGACCCCCgCgcgcgacgccuagCCCGCAc -3'
miRNA:   3'- -GGGa-GGG-GGGUUUGGGGG-Ga------------GGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 58796 0.68 0.497442
Target:  5'- cCCCggCCCgCCGuacGACCCgCCgaCCCACAc -3'
miRNA:   3'- -GGGa-GGGgGGU---UUGGG-GGgaGGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 125198 0.68 0.497442
Target:  5'- cCUCUUCCCCCGAAaguUCCCCCaUUCGCu -3'
miRNA:   3'- -GGGAGGGGGGUUU---GGGGGGaGGGUGu -5'
19871 5' -62.6 NC_004687.1 + 129950 0.68 0.506618
Target:  5'- gCCUCCCCa-----CCCUUUCCCACGa -3'
miRNA:   3'- gGGAGGGGgguuugGGGGGAGGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 138144 0.68 0.515866
Target:  5'- gCCCUCCCggaucuUCC-AGCCCaCCUUgCCGCAg -3'
miRNA:   3'- -GGGAGGG------GGGuUUGGG-GGGAgGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 16481 0.68 0.515866
Target:  5'- aCCgUCCCCCAGACCCgCaa-CCGCAu -3'
miRNA:   3'- gGGaGGGGGGUUUGGGgGgagGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 104934 0.68 0.525181
Target:  5'- gCCUCCCgCCAGACCaCCgCCggUCgCCGCc -3'
miRNA:   3'- gGGAGGGgGGUUUGG-GG-GG--AG-GGUGu -5'
19871 5' -62.6 NC_004687.1 + 59735 0.68 0.534558
Target:  5'- gCCCgagggCCCCUguAcCCuCCCCgUCCCGCGc -3'
miRNA:   3'- -GGGa----GGGGGguUuGG-GGGG-AGGGUGU- -5'
19871 5' -62.6 NC_004687.1 + 16541 0.68 0.543995
Target:  5'- aCCUUCgCCCAGGCCCgCgCCgcugCCCugGa -3'
miRNA:   3'- gGGAGGgGGGUUUGGG-G-GGa---GGGugU- -5'
19871 5' -62.6 NC_004687.1 + 80430 0.67 0.591879
Target:  5'- aCCCguagUCCCCCCGGcgggcccaggcGCCCCggCCUCCaccgACGa -3'
miRNA:   3'- -GGG----AGGGGGGUU-----------UGGGG--GGAGGg---UGU- -5'
19871 5' -62.6 NC_004687.1 + 128068 0.67 0.591879
Target:  5'- gCCCgggCCCgcaagggcaaCCCGgucgcgccGACCCCgCCUCCgGCAg -3'
miRNA:   3'- -GGGa--GGG----------GGGU--------UUGGGG-GGAGGgUGU- -5'
19871 5' -62.6 NC_004687.1 + 155928 0.67 0.591879
Target:  5'- uCCC-CCCCCC---CCCCCC-CCC--- -3'
miRNA:   3'- -GGGaGGGGGGuuuGGGGGGaGGGugu -5'
19871 5' -62.6 NC_004687.1 + 131802 0.67 0.601558
Target:  5'- aCCUCCCUCgGAGgCUCCgguCUCUCACGa -3'
miRNA:   3'- gGGAGGGGGgUUUgGGGG---GAGGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.