Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19874 | 3' | -54.1 | NC_004687.1 | + | 49670 | 0.66 | 0.95695 |
Target: 5'- aGCUCGGCGucggaggcgcgguccAGGGCAGcGAUcuccugacGCCggaCCUCCa -3' miRNA: 3'- -UGAGUCGU---------------UUCUGUC-CUA--------CGG---GGAGG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 57047 | 0.66 | 0.951346 |
Target: 5'- uUUCAGgAuccGGCGGGAUGgaCCUUCCa -3' miRNA: 3'- uGAGUCgUuu-CUGUCCUACg-GGGAGG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 8173 | 0.66 | 0.947057 |
Target: 5'- gGCUCGGCcacGGugGcGGAaGCCUCUUCc -3' miRNA: 3'- -UGAGUCGuu-UCugU-CCUaCGGGGAGG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 119901 | 0.66 | 0.947057 |
Target: 5'- cGCUCGGCuuGGugGuGGAUGuaucacguCCCCaCCg -3' miRNA: 3'- -UGAGUCGuuUCugU-CCUAC--------GGGGaGG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 121034 | 0.66 | 0.946615 |
Target: 5'- cCUCGGCGAuGAgcugcucCAGGGUGCCCg--- -3' miRNA: 3'- uGAGUCGUUuCU-------GUCCUACGGGgagg -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 9342 | 0.66 | 0.942527 |
Target: 5'- gACgCAGCAGgcuguccgggccGGACAGGAUGUUggugCCUCg -3' miRNA: 3'- -UGaGUCGUU------------UCUGUCCUACGG----GGAGg -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 129863 | 0.66 | 0.942527 |
Target: 5'- uCUcCAGUGAAGGCgaAGGA-GCCCCggaaCCg -3' miRNA: 3'- uGA-GUCGUUUCUG--UCCUaCGGGGa---GG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 138839 | 0.67 | 0.927458 |
Target: 5'- cCUCAGCAcuGACGcGGuagGCCUC-CCa -3' miRNA: 3'- uGAGUCGUuuCUGU-CCua-CGGGGaGG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 55291 | 0.67 | 0.927458 |
Target: 5'- uCUCAGCuauAGGCccguGGUGCCCCUg- -3' miRNA: 3'- uGAGUCGuu-UCUGuc--CUACGGGGAgg -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 44851 | 0.67 | 0.916174 |
Target: 5'- gGC-CAGCucgccGGGCcGGAUGCCCCg-- -3' miRNA: 3'- -UGaGUCGuu---UCUGuCCUACGGGGagg -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 23315 | 0.67 | 0.916174 |
Target: 5'- cGCUCAGgaGGAGcGCAGGGagGCCCUgcgggCCa -3' miRNA: 3'- -UGAGUCg-UUUC-UGUCCUa-CGGGGa----GG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 74837 | 0.68 | 0.903903 |
Target: 5'- cCUCGGCGAGcuuGcCAGGGUGaCCgCCUCg -3' miRNA: 3'- uGAGUCGUUU---CuGUCCUAC-GG-GGAGg -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 88376 | 0.68 | 0.897402 |
Target: 5'- aACUaccuGGCGGAGAaGGGuAUGCUCUUCCu -3' miRNA: 3'- -UGAg---UCGUUUCUgUCC-UACGGGGAGG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 86854 | 0.68 | 0.890662 |
Target: 5'- cGCUCuggcgcgcgGGCAAAGAuCAGGGUGCUCaCUa- -3' miRNA: 3'- -UGAG---------UCGUUUCU-GUCCUACGGG-GAgg -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 125137 | 0.68 | 0.890662 |
Target: 5'- uGCagGGCGAGGAgccGGUGcCCCCUCCu -3' miRNA: 3'- -UGagUCGUUUCUgucCUAC-GGGGAGG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 138987 | 0.68 | 0.890662 |
Target: 5'- gGCggCAGCGGAGGCccGGGUGCCggagCgUCCg -3' miRNA: 3'- -UGa-GUCGUUUCUGu-CCUACGG----GgAGG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 106117 | 0.68 | 0.890662 |
Target: 5'- aGCgucCGGCcAAGaACAGGGagaGCCUCUCCg -3' miRNA: 3'- -UGa--GUCGuUUC-UGUCCUa--CGGGGAGG- -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 83222 | 0.68 | 0.889975 |
Target: 5'- -gUCAGCAAAGAUAcgaagcuGGAgcGCUCCUCa -3' miRNA: 3'- ugAGUCGUUUCUGU-------CCUa-CGGGGAGg -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 84498 | 0.68 | 0.883686 |
Target: 5'- uGCUgGGUuuGGACAGGGUGCaCCaCUg- -3' miRNA: 3'- -UGAgUCGuuUCUGUCCUACG-GG-GAgg -5' |
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19874 | 3' | -54.1 | NC_004687.1 | + | 31368 | 0.68 | 0.875745 |
Target: 5'- cCUCGGCAucGACgaucaucGGGGUGCCgucguCCUCg -3' miRNA: 3'- uGAGUCGUuuCUG-------UCCUACGG-----GGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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