miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19890 3' -52.5 NC_004687.1 + 90228 0.66 0.981319
Target:  5'- aCGGUCCGUcuGcGUCGCCuguccGACGGCGu -3'
miRNA:   3'- -GUUAGGCGuuCuCAGUGG-----CUGUCGUg -5'
19890 3' -52.5 NC_004687.1 + 71589 0.66 0.981319
Target:  5'- gCGGUCUGCAc----CACCGACGGCGu -3'
miRNA:   3'- -GUUAGGCGUucucaGUGGCUGUCGUg -5'
19890 3' -52.5 NC_004687.1 + 58912 0.66 0.981319
Target:  5'- ---aCCGCAgcuGGAGuUCAUCGA-GGCGCg -3'
miRNA:   3'- guuaGGCGU---UCUC-AGUGGCUgUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 43928 0.66 0.981319
Target:  5'- ---aCCGCAAGcGU-GCCGAC-GCGCu -3'
miRNA:   3'- guuaGGCGUUCuCAgUGGCUGuCGUG- -5'
19890 3' -52.5 NC_004687.1 + 149857 0.66 0.981105
Target:  5'- ---cCCGCcAGAucgccGUCGCCGACgcccacaAGCGCu -3'
miRNA:   3'- guuaGGCGuUCU-----CAGUGGCUG-------UCGUG- -5'
19890 3' -52.5 NC_004687.1 + 17090 0.66 0.979096
Target:  5'- --cUCCgGCGccagcGGAucGUCACCGGCGGaCGCa -3'
miRNA:   3'- guuAGG-CGU-----UCU--CAGUGGCUGUC-GUG- -5'
19890 3' -52.5 NC_004687.1 + 81717 0.66 0.979096
Target:  5'- aCGAUCUGCugugcGG-CACUGACGGUACc -3'
miRNA:   3'- -GUUAGGCGuuc--UCaGUGGCUGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 34420 0.66 0.979096
Target:  5'- uGAUCCGCAAG----GCCGAguGCGa -3'
miRNA:   3'- gUUAGGCGUUCucagUGGCUguCGUg -5'
19890 3' -52.5 NC_004687.1 + 70280 0.66 0.976683
Target:  5'- cCGAUCCGU-AGA--UGCCGGuCAGCGCg -3'
miRNA:   3'- -GUUAGGCGuUCUcaGUGGCU-GUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 137822 0.66 0.976683
Target:  5'- aCAGcUCCGguCAGGuGGUCgacGCCGACGGCAa -3'
miRNA:   3'- -GUU-AGGC--GUUC-UCAG---UGGCUGUCGUg -5'
19890 3' -52.5 NC_004687.1 + 9328 0.66 0.976683
Target:  5'- gGcgCCGCGAGuGGaCACCGGCGGgcUACg -3'
miRNA:   3'- gUuaGGCGUUC-UCaGUGGCUGUC--GUG- -5'
19890 3' -52.5 NC_004687.1 + 45880 0.66 0.976431
Target:  5'- uGGUCCGCGAGcagcGUCcgggugggcguuaGCCGcGCAGCAg -3'
miRNA:   3'- gUUAGGCGUUCu---CAG-------------UGGC-UGUCGUg -5'
19890 3' -52.5 NC_004687.1 + 31468 0.66 0.974071
Target:  5'- --cUCCucggGCAGGAcGUCGCgGACcGCGCg -3'
miRNA:   3'- guuAGG----CGUUCU-CAGUGgCUGuCGUG- -5'
19890 3' -52.5 NC_004687.1 + 70340 0.66 0.974071
Target:  5'- aCGAcCCgGCuccGGcGUCGCCGcACAGCGCg -3'
miRNA:   3'- -GUUaGG-CGu--UCuCAGUGGC-UGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 55252 0.66 0.974071
Target:  5'- ---cCCGCAAGgcuGGUCAUCGu--GCACg -3'
miRNA:   3'- guuaGGCGUUC---UCAGUGGCuguCGUG- -5'
19890 3' -52.5 NC_004687.1 + 2492 0.66 0.974071
Target:  5'- gGGUCgGCGA-AGUCGCgGACAGuUACa -3'
miRNA:   3'- gUUAGgCGUUcUCAGUGgCUGUC-GUG- -5'
19890 3' -52.5 NC_004687.1 + 83828 0.66 0.974071
Target:  5'- cCGGUCUGCAGuuccccucgacGA-UCACCGuCGGCACc -3'
miRNA:   3'- -GUUAGGCGUU-----------CUcAGUGGCuGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 75934 0.66 0.971253
Target:  5'- gAcgCCGguGGcGGUCGCUGGgAGUACa -3'
miRNA:   3'- gUuaGGCguUC-UCAGUGGCUgUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 118754 0.66 0.971253
Target:  5'- ----gCGCGAGAGUCcUCGcGCGGUACg -3'
miRNA:   3'- guuagGCGUUCUCAGuGGC-UGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 81313 0.66 0.971253
Target:  5'- uGGUCgGCAcccAG-GUCACCGucGCGGCAg -3'
miRNA:   3'- gUUAGgCGU---UCuCAGUGGC--UGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.