miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19890 3' -52.5 NC_004687.1 + 92959 0.66 0.971253
Target:  5'- --uUCUuCGAGGGcCGCUGGCAGCAg -3'
miRNA:   3'- guuAGGcGUUCUCaGUGGCUGUCGUg -5'
19890 3' -52.5 NC_004687.1 + 81313 0.66 0.971253
Target:  5'- uGGUCgGCAcccAG-GUCACCGucGCGGCAg -3'
miRNA:   3'- gUUAGgCGU---UCuCAGUGGC--UGUCGUg -5'
19890 3' -52.5 NC_004687.1 + 22845 0.66 0.971253
Target:  5'- -uGUCgGUGAGAGUCuucuUCGGCGcGCGCg -3'
miRNA:   3'- guUAGgCGUUCUCAGu---GGCUGU-CGUG- -5'
19890 3' -52.5 NC_004687.1 + 60465 0.67 0.969461
Target:  5'- aGGUCCGggcCAAccggcucgaccagauGAGcgCGCCGACGGCGCc -3'
miRNA:   3'- gUUAGGC---GUU---------------CUCa-GUGGCUGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 94422 0.67 0.968222
Target:  5'- ---cCUGCGAGA-UCugCGACAGCu- -3'
miRNA:   3'- guuaGGCGUUCUcAGugGCUGUCGug -5'
19890 3' -52.5 NC_004687.1 + 89752 0.67 0.968222
Target:  5'- aCGGUCUGguuCGAGAgcGUCAaggUCGACAGCGCc -3'
miRNA:   3'- -GUUAGGC---GUUCU--CAGU---GGCUGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 22828 0.67 0.968222
Target:  5'- aGAUCCaGCAGGGG--ACUGuCGGCGCg -3'
miRNA:   3'- gUUAGG-CGUUCUCagUGGCuGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 154961 0.67 0.96497
Target:  5'- gGGUCCagguaGCGAGAG-CGCUGACGGUu- -3'
miRNA:   3'- gUUAGG-----CGUUCUCaGUGGCUGUCGug -5'
19890 3' -52.5 NC_004687.1 + 136944 0.67 0.96497
Target:  5'- gCAGUCgCGCA--GGUCGCCGAgAGUu- -3'
miRNA:   3'- -GUUAG-GCGUucUCAGUGGCUgUCGug -5'
19890 3' -52.5 NC_004687.1 + 114974 0.67 0.96497
Target:  5'- ---cCCGCGAGG---ACgCGGCAGCACg -3'
miRNA:   3'- guuaGGCGUUCUcagUG-GCUGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 49273 0.67 0.96497
Target:  5'- uCGcgCgGCAAGguggugacggcuGGUCGUCGGCAGCACu -3'
miRNA:   3'- -GUuaGgCGUUC------------UCAGUGGCUGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 6874 0.67 0.96497
Target:  5'- cCGcgCCGCAGGGGaggaAUCGugAGCAg -3'
miRNA:   3'- -GUuaGGCGUUCUCag--UGGCugUCGUg -5'
19890 3' -52.5 NC_004687.1 + 19848 0.67 0.96497
Target:  5'- gUAAUCCGCgAGGAGuacaUCAUCG-CGGCGg -3'
miRNA:   3'- -GUUAGGCG-UUCUC----AGUGGCuGUCGUg -5'
19890 3' -52.5 NC_004687.1 + 105691 0.67 0.964633
Target:  5'- aGAUCCGCAAGcGGguguucaacUCGCUGACcgagaccuucgcuAGCGCg -3'
miRNA:   3'- gUUAGGCGUUC-UC---------AGUGGCUG-------------UCGUG- -5'
19890 3' -52.5 NC_004687.1 + 148393 0.67 0.961492
Target:  5'- -cAUCCGCAuccugcagcAGAcGuUCACCGAgCAGCAg -3'
miRNA:   3'- guUAGGCGU---------UCU-C-AGUGGCU-GUCGUg -5'
19890 3' -52.5 NC_004687.1 + 50106 0.67 0.961492
Target:  5'- aAGUCCaGCAAG-GUCAa-GACGGCAg -3'
miRNA:   3'- gUUAGG-CGUUCuCAGUggCUGUCGUg -5'
19890 3' -52.5 NC_004687.1 + 143169 0.67 0.961492
Target:  5'- gAAUCCGgGGGAGUCccACuCGuCGGUGCg -3'
miRNA:   3'- gUUAGGCgUUCUCAG--UG-GCuGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 59803 0.67 0.957781
Target:  5'- ----aCGCAGGGGUCACgUGACGGUc- -3'
miRNA:   3'- guuagGCGUUCUCAGUG-GCUGUCGug -5'
19890 3' -52.5 NC_004687.1 + 125932 0.67 0.957781
Target:  5'- aGcgCCGCGAuGAcggcguagGUCcagaaccgcGCCGACAGCGCg -3'
miRNA:   3'- gUuaGGCGUU-CU--------CAG---------UGGCUGUCGUG- -5'
19890 3' -52.5 NC_004687.1 + 84024 0.67 0.955441
Target:  5'- ---cCCGUAGGGGUCccacaugcgcggcauGCCGAUGGCGu -3'
miRNA:   3'- guuaGGCGUUCUCAG---------------UGGCUGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.