miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19890 5' -56.7 NC_004687.1 + 83664 0.66 0.916609
Target:  5'- gGCuugACCGCGCaucGAGGcgGUCUC-CGgGCu -3'
miRNA:   3'- -CGca-UGGCGCG---CUCC--UAGAGaGCgCG- -5'
19890 5' -56.7 NC_004687.1 + 90335 0.66 0.916609
Target:  5'- uGCGgcUCGacgGUGAcguccuggaacuGGAUCUCgUCGCGCu -3'
miRNA:   3'- -CGCauGGCg--CGCU------------CCUAGAG-AGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 107450 0.66 0.916609
Target:  5'- aCGUACUGCGac-GGGUCguggUCGUGCg -3'
miRNA:   3'- cGCAUGGCGCgcuCCUAGag--AGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 109869 0.66 0.916043
Target:  5'- -gGUGCCcgaccugcaacagGCGCG-GGAcCUacaUCGCGCg -3'
miRNA:   3'- cgCAUGG-------------CGCGCuCCUaGAg--AGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 27639 0.66 0.910848
Target:  5'- cGCGUccuugaugcugGCCGCGaCGAGcaGUUUCggGCGCa -3'
miRNA:   3'- -CGCA-----------UGGCGC-GCUCc-UAGAGagCGCG- -5'
19890 5' -56.7 NC_004687.1 + 92385 0.66 0.910848
Target:  5'- cGCGgGuuGCGCGGcucgucgacgccGG-UCUCcCGCGCg -3'
miRNA:   3'- -CGCaUggCGCGCU------------CCuAGAGaGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 19840 0.66 0.910848
Target:  5'- uGCGcACCGUaauccGCGAGGAguacaUCaUCGCGg -3'
miRNA:   3'- -CGCaUGGCG-----CGCUCCUag---AG-AGCGCg -5'
19890 5' -56.7 NC_004687.1 + 77967 0.66 0.90302
Target:  5'- cGCG-ACCGCGCcagagcgcaugaucGAGGucaUC-CGCGCc -3'
miRNA:   3'- -CGCaUGGCGCG--------------CUCCuagAGaGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 69879 0.66 0.892214
Target:  5'- gGUGUcCUGCG-GAGcGAUCUUgucgagcaugUCGCGCa -3'
miRNA:   3'- -CGCAuGGCGCgCUC-CUAGAG----------AGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 6618 0.67 0.88556
Target:  5'- gGCG-ACCGCGauCGAGGc---CUUGCGCu -3'
miRNA:   3'- -CGCaUGGCGC--GCUCCuagaGAGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 26351 0.67 0.881464
Target:  5'- uCGgagACCGCaCGccgccagucggcauuGGGGUC-CUCGCGCa -3'
miRNA:   3'- cGCa--UGGCGcGC---------------UCCUAGaGAGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 67518 0.67 0.878691
Target:  5'- cGgGUGCCGaC-CGGcGAUCUCgCGCGCc -3'
miRNA:   3'- -CgCAUGGC-GcGCUcCUAGAGaGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 106665 0.67 0.871612
Target:  5'- --uUGCCGCGCGAGGcgagAUUgCUgCGUGCc -3'
miRNA:   3'- cgcAUGGCGCGCUCC----UAGaGA-GCGCG- -5'
19890 5' -56.7 NC_004687.1 + 55827 0.67 0.864326
Target:  5'- gGCGUGCCGgaCGaCGAGGggUUCUaCGaGCa -3'
miRNA:   3'- -CGCAUGGC--GC-GCUCCuaGAGA-GCgCG- -5'
19890 5' -56.7 NC_004687.1 + 151642 0.67 0.864326
Target:  5'- uGCGUAgCgGCGCGAcGGUCUuCUCGUcCa -3'
miRNA:   3'- -CGCAU-GgCGCGCUcCUAGA-GAGCGcG- -5'
19890 5' -56.7 NC_004687.1 + 132530 0.67 0.856839
Target:  5'- aGCG-AUCGUgGCGAGGAUCUUggucaUgGUGCu -3'
miRNA:   3'- -CGCaUGGCG-CGCUCCUAGAG-----AgCGCG- -5'
19890 5' -56.7 NC_004687.1 + 137642 0.67 0.856839
Target:  5'- aCGUcGCCGCGCG-GGAcgUCggagUCGUGCu -3'
miRNA:   3'- cGCA-UGGCGCGCuCCU--AGag--AGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 118749 0.67 0.856839
Target:  5'- gGUGg---GCGCGAGaGUC-CUCGCGCg -3'
miRNA:   3'- -CGCauggCGCGCUCcUAGaGAGCGCG- -5'
19890 5' -56.7 NC_004687.1 + 66794 0.67 0.85608
Target:  5'- gGCGaucGCCGCGUcgcgcuuGAGGGUCUuguaCUCGUaGCg -3'
miRNA:   3'- -CGCa--UGGCGCG-------CUCCUAGA----GAGCG-CG- -5'
19890 5' -56.7 NC_004687.1 + 127324 0.68 0.841287
Target:  5'- gGUGUugGCCGUGCGcuGccaAUC-CUCGCGCa -3'
miRNA:   3'- -CGCA--UGGCGCGCucC---UAGaGAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.