miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19899 3' -52.7 NC_004687.1 + 44406 0.66 0.989249
Target:  5'- cGCUGGacCGGcugGUCUCuUCCUUGAUgUCg -3'
miRNA:   3'- -CGACU--GCC---UAGAGcAGGAGCUAgAGg -5'
19899 3' -52.7 NC_004687.1 + 28215 0.66 0.989249
Target:  5'- -gUGACGGAagcgaUCGUggUCGAUCUCg -3'
miRNA:   3'- cgACUGCCUag---AGCAggAGCUAGAGg -5'
19899 3' -52.7 NC_004687.1 + 107114 0.66 0.989249
Target:  5'- uGCUGACGGucgAUCUgugCGgCCUCGGacagaUCCg -3'
miRNA:   3'- -CGACUGCC---UAGA---GCaGGAGCUag---AGG- -5'
19899 3' -52.7 NC_004687.1 + 82709 0.66 0.989249
Target:  5'- uCUGACGcugcagCaUGUCCUCGGUgUCCu -3'
miRNA:   3'- cGACUGCcua---GaGCAGGAGCUAgAGG- -5'
19899 3' -52.7 NC_004687.1 + 140119 0.66 0.987821
Target:  5'- cGCaGAUGGAUgcgCUCGcUCUgaccgcCGGUCUCCc -3'
miRNA:   3'- -CGaCUGCCUA---GAGC-AGGa-----GCUAGAGG- -5'
19899 3' -52.7 NC_004687.1 + 111877 0.66 0.98625
Target:  5'- aCUGAC-GAUgUCGUCCggccCaGUCUCCu -3'
miRNA:   3'- cGACUGcCUAgAGCAGGa---GcUAGAGG- -5'
19899 3' -52.7 NC_004687.1 + 137194 0.66 0.98625
Target:  5'- uGCgca-GGGUCUCGgCCUgGAUCUUg -3'
miRNA:   3'- -CGacugCCUAGAGCaGGAgCUAGAGg -5'
19899 3' -52.7 NC_004687.1 + 131250 0.66 0.98625
Target:  5'- gGCUcGCGaGUCUCGggCCUgcCGAUCUCg -3'
miRNA:   3'- -CGAcUGCcUAGAGCa-GGA--GCUAGAGg -5'
19899 3' -52.7 NC_004687.1 + 133535 0.66 0.98625
Target:  5'- cGC-GGCGGAUUUCGcCCUCcacaUCCc -3'
miRNA:   3'- -CGaCUGCCUAGAGCaGGAGcuagAGG- -5'
19899 3' -52.7 NC_004687.1 + 135212 0.66 0.98625
Target:  5'- cGCUcGGCGcGAUCgCGUUCcCGGUgCUCCc -3'
miRNA:   3'- -CGA-CUGC-CUAGaGCAGGaGCUA-GAGG- -5'
19899 3' -52.7 NC_004687.1 + 121298 0.66 0.984529
Target:  5'- --cGaACGGAUUggagUCGUCCUCGGa-UCCg -3'
miRNA:   3'- cgaC-UGCCUAG----AGCAGGAGCUagAGG- -5'
19899 3' -52.7 NC_004687.1 + 69154 0.66 0.984529
Target:  5'- cGCgggaucGCGGAUCUCGcCCaCGGUCUg- -3'
miRNA:   3'- -CGac----UGCCUAGAGCaGGaGCUAGAgg -5'
19899 3' -52.7 NC_004687.1 + 56748 0.66 0.984529
Target:  5'- cCUGACGGAUUaCGauaCCgCGAcCUCCg -3'
miRNA:   3'- cGACUGCCUAGaGCa--GGaGCUaGAGG- -5'
19899 3' -52.7 NC_004687.1 + 121126 0.66 0.984529
Target:  5'- aGCUGGCucAUCUCGUCCUgUGGcagCUCg -3'
miRNA:   3'- -CGACUGccUAGAGCAGGA-GCUa--GAGg -5'
19899 3' -52.7 NC_004687.1 + 30685 0.66 0.983421
Target:  5'- uGCUuGCGGAcccgugucagauggC-CGUCCUCGuucUCUCCg -3'
miRNA:   3'- -CGAcUGCCUa-------------GaGCAGGAGCu--AGAGG- -5'
19899 3' -52.7 NC_004687.1 + 47093 0.66 0.983421
Target:  5'- aGCUG-CGGAUCUUGgUCCgaugcucaugCUCCa -3'
miRNA:   3'- -CGACuGCCUAGAGC-AGGagcua-----GAGG- -5'
19899 3' -52.7 NC_004687.1 + 16346 0.66 0.982649
Target:  5'- cGCUGACcaGAUCgg--CCUugcCGGUCUCCa -3'
miRNA:   3'- -CGACUGc-CUAGagcaGGA---GCUAGAGG- -5'
19899 3' -52.7 NC_004687.1 + 102273 0.66 0.982649
Target:  5'- uGCU--UGGAggUCggGUCCUCGAaCUCCg -3'
miRNA:   3'- -CGAcuGCCU--AGagCAGGAGCUaGAGG- -5'
19899 3' -52.7 NC_004687.1 + 128907 0.66 0.982649
Target:  5'- --cGGCuGGAUCUUGUUCgacUGAUCUCa -3'
miRNA:   3'- cgaCUG-CCUAGAGCAGGa--GCUAGAGg -5'
19899 3' -52.7 NC_004687.1 + 153519 0.66 0.980602
Target:  5'- gGCUGGCGGAUCUucagcaCGUCaUCGggCgaguaguagUCCu -3'
miRNA:   3'- -CGACUGCCUAGA------GCAGgAGCuaG---------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.