miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1990 3' -51.3 NC_001347.2 + 180293 0.66 0.997121
Target:  5'- aGCGCAGcgucggcGAGCGAAGGUAgAGGaGuCCGu -3'
miRNA:   3'- -UGUGUCa------UUCGUUUUCGUgUCC-C-GGC- -5'
1990 3' -51.3 NC_001347.2 + 38758 0.66 0.997121
Target:  5'- gGCugAGgcAGCAGcgucgcGCGCGGGGUg- -3'
miRNA:   3'- -UGugUCauUCGUUuu----CGUGUCCCGgc -5'
1990 3' -51.3 NC_001347.2 + 107101 0.66 0.997121
Target:  5'- cGCGCuGUGcuGGCAucgaguggAAGGCGgcaucuCGGGGCCGc -3'
miRNA:   3'- -UGUGuCAU--UCGU--------UUUCGU------GUCCCGGC- -5'
1990 3' -51.3 NC_001347.2 + 167200 0.66 0.996609
Target:  5'- -aGCGG-AGGCAAAGGCGa--GGCCGc -3'
miRNA:   3'- ugUGUCaUUCGUUUUCGUgucCCGGC- -5'
1990 3' -51.3 NC_001347.2 + 34880 0.66 0.996609
Target:  5'- --cCGGUGAGCAGuaccaccaugauGAGCGCGGaGCCu -3'
miRNA:   3'- uguGUCAUUCGUU------------UUCGUGUCcCGGc -5'
1990 3' -51.3 NC_001347.2 + 116651 0.66 0.996609
Target:  5'- uGCugAGcu-GCAuGAGCACGGcGCCGc -3'
miRNA:   3'- -UGugUCauuCGUuUUCGUGUCcCGGC- -5'
1990 3' -51.3 NC_001347.2 + 209377 0.66 0.996609
Target:  5'- cCACAGUccuAAGCAu-AGacgaaACAGGGCaCGa -3'
miRNA:   3'- uGUGUCA---UUCGUuuUCg----UGUCCCG-GC- -5'
1990 3' -51.3 NC_001347.2 + 76616 0.66 0.996554
Target:  5'- uCGCAGgcGGCGGcuGCggccgcgGCGGaGGCCGa -3'
miRNA:   3'- uGUGUCauUCGUUuuCG-------UGUC-CCGGC- -5'
1990 3' -51.3 NC_001347.2 + 67883 0.66 0.996267
Target:  5'- cUACGGgaGGCucacgaguccacucgGAAAGCACcgugacgcgaggAGGGCCGg -3'
miRNA:   3'- uGUGUCauUCG---------------UUUUCGUG------------UCCCGGC- -5'
1990 3' -51.3 NC_001347.2 + 19260 0.66 0.995359
Target:  5'- -gACGGUcGAGgGAacGAGCGguGGGCCu -3'
miRNA:   3'- ugUGUCA-UUCgUU--UUCGUguCCCGGc -5'
1990 3' -51.3 NC_001347.2 + 39280 0.66 0.995359
Target:  5'- uCugAGacAGCAAcAGGCGCuccGGGCCGu -3'
miRNA:   3'- uGugUCauUCGUU-UUCGUGu--CCCGGC- -5'
1990 3' -51.3 NC_001347.2 + 108200 0.66 0.995359
Target:  5'- cGCGCAGgcAGCAuggaGucGCGCGGucGCCGu -3'
miRNA:   3'- -UGUGUCauUCGU----UuuCGUGUCc-CGGC- -5'
1990 3' -51.3 NC_001347.2 + 68212 0.66 0.995288
Target:  5'- cACGCAGacGGCGGAAGCgguagacGCGGcGCCGc -3'
miRNA:   3'- -UGUGUCauUCGUUUUCG-------UGUCcCGGC- -5'
1990 3' -51.3 NC_001347.2 + 36301 0.66 0.995288
Target:  5'- uGCGgGGUggugcucGAGCGAGAGCacugACAGGGgUGg -3'
miRNA:   3'- -UGUgUCA-------UUCGUUUUCG----UGUCCCgGC- -5'
1990 3' -51.3 NC_001347.2 + 75709 0.66 0.994919
Target:  5'- uGCGCaaGGUGAGCAGcgucucacggcuaucGGGCGCAGuGGUgGu -3'
miRNA:   3'- -UGUG--UCAUUCGUU---------------UUCGUGUC-CCGgC- -5'
1990 3' -51.3 NC_001347.2 + 158429 0.66 0.994607
Target:  5'- uACGC-GUGGGCugGAAAGCcguGCuGGGCCu -3'
miRNA:   3'- -UGUGuCAUUCG--UUUUCG---UGuCCCGGc -5'
1990 3' -51.3 NC_001347.2 + 192991 0.66 0.994607
Target:  5'- uCGCGGcUGAGCGuguGGAGgACGGGGUgGa -3'
miRNA:   3'- uGUGUC-AUUCGU---UUUCgUGUCCCGgC- -5'
1990 3' -51.3 NC_001347.2 + 1720 0.66 0.994607
Target:  5'- -gACGGgagcuGCGccGGCGguGGGCCGg -3'
miRNA:   3'- ugUGUCauu--CGUuuUCGUguCCCGGC- -5'
1990 3' -51.3 NC_001347.2 + 148647 0.67 0.993758
Target:  5'- uCGCAGcccGGCucc-GCGCAGGGCuCGg -3'
miRNA:   3'- uGUGUCau-UCGuuuuCGUGUCCCG-GC- -5'
1990 3' -51.3 NC_001347.2 + 198132 0.67 0.993758
Target:  5'- cGCGCGGUGgcAGCGGGGGUGguGGGgaUCGg -3'
miRNA:   3'- -UGUGUCAU--UCGUUUUCGUguCCC--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.