miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1990 5' -65.9 NC_001347.2 + 163613 0.66 0.603628
Target:  5'- gGCCAGUgUcagCGCCga-GCCGCgGCUGCc -3'
miRNA:   3'- -UGGUCGgG---GCGGuagCGGCGgCGGCG- -5'
1990 5' -65.9 NC_001347.2 + 98198 0.66 0.603628
Target:  5'- aACaCAGgCCCGauGUgGCUGCgGCCGCc -3'
miRNA:   3'- -UG-GUCgGGGCggUAgCGGCGgCGGCG- -5'
1990 5' -65.9 NC_001347.2 + 67631 0.66 0.602697
Target:  5'- gACguGUCCagcggcagcgacaUGCgGcCGCUGCCGCCGCc -3'
miRNA:   3'- -UGguCGGG-------------GCGgUaGCGGCGGCGGCG- -5'
1990 5' -65.9 NC_001347.2 + 16514 0.66 0.594329
Target:  5'- uGCUGGCCCUuCgAgguagCGCCaGCCGcCCGCu -3'
miRNA:   3'- -UGGUCGGGGcGgUa----GCGG-CGGC-GGCG- -5'
1990 5' -65.9 NC_001347.2 + 135957 0.66 0.594329
Target:  5'- cCCAGCCCgGCCGg-GCCGUCGg--- -3'
miRNA:   3'- uGGUCGGGgCGGUagCGGCGGCggcg -5'
1990 5' -65.9 NC_001347.2 + 88658 0.66 0.594329
Target:  5'- uGCgCAGCUUCGCgCAUCcacuGgCGCCGgCGCg -3'
miRNA:   3'- -UG-GUCGGGGCG-GUAG----CgGCGGCgGCG- -5'
1990 5' -65.9 NC_001347.2 + 106555 0.66 0.594329
Target:  5'- uCCAGaUUCUGCUcUCuaCGCCGCUGCa -3'
miRNA:   3'- uGGUC-GGGGCGGuAGcgGCGGCGGCG- -5'
1990 5' -65.9 NC_001347.2 + 107328 0.66 0.594329
Target:  5'- cGCCAGCCgaC-CCAguggcguuUCGCCuGCgGCUGCg -3'
miRNA:   3'- -UGGUCGGg-GcGGU--------AGCGG-CGgCGGCG- -5'
1990 5' -65.9 NC_001347.2 + 126027 0.66 0.594329
Target:  5'- --uGGCgCCCGUCuUCGCCGUgaacaacgaaaCGCUGCa -3'
miRNA:   3'- uggUCG-GGGCGGuAGCGGCG-----------GCGGCG- -5'
1990 5' -65.9 NC_001347.2 + 63148 0.66 0.594329
Target:  5'- cGCCGcaaaCCCCGUCAUgC-CCGCCaCCGCc -3'
miRNA:   3'- -UGGUc---GGGGCGGUA-GcGGCGGcGGCG- -5'
1990 5' -65.9 NC_001347.2 + 214641 0.66 0.585053
Target:  5'- --uGGCUUCGCCAgCGUCGCCaaGCCGa -3'
miRNA:   3'- uggUCGGGGCGGUaGCGGCGG--CGGCg -5'
1990 5' -65.9 NC_001347.2 + 110664 0.66 0.585053
Target:  5'- gUCAGCCaguuCGCCuuucgCGCCGgCGCCa- -3'
miRNA:   3'- uGGUCGGg---GCGGua---GCGGCgGCGGcg -5'
1990 5' -65.9 NC_001347.2 + 1232 0.66 0.585053
Target:  5'- cACgGGCCgCGCCAUgCGCaaGUgGUCGCa -3'
miRNA:   3'- -UGgUCGGgGCGGUA-GCGg-CGgCGGCG- -5'
1990 5' -65.9 NC_001347.2 + 201221 0.66 0.575806
Target:  5'- cGCguGCCaauuuuuucgCUGCCAaCGCCGUCaagGCCGCc -3'
miRNA:   3'- -UGguCGG----------GGCGGUaGCGGCGG---CGGCG- -5'
1990 5' -65.9 NC_001347.2 + 125738 0.66 0.575806
Target:  5'- cGCgCAGCuCCCGUCcUCGCUagGCUGCaGCa -3'
miRNA:   3'- -UG-GUCG-GGGCGGuAGCGG--CGGCGgCG- -5'
1990 5' -65.9 NC_001347.2 + 159435 0.66 0.575806
Target:  5'- uAUCuGUCCguCGUCGUCugcgGCCGCgGCCGCu -3'
miRNA:   3'- -UGGuCGGG--GCGGUAG----CGGCGgCGGCG- -5'
1990 5' -65.9 NC_001347.2 + 83377 0.66 0.575806
Target:  5'- cCCAGCaugaUCGCCuUCaUgGCCGCCGUg -3'
miRNA:   3'- uGGUCGg---GGCGGuAGcGgCGGCGGCG- -5'
1990 5' -65.9 NC_001347.2 + 39246 0.66 0.575806
Target:  5'- uCCAGCUCCGUCAgCGCCuGgCGCUcCa -3'
miRNA:   3'- uGGUCGGGGCGGUaGCGG-CgGCGGcG- -5'
1990 5' -65.9 NC_001347.2 + 200937 0.66 0.575806
Target:  5'- cGCUGGCCCguCGaccuuauccCCAUCGUCGUCGCCu- -3'
miRNA:   3'- -UGGUCGGG--GC---------GGUAGCGGCGGCGGcg -5'
1990 5' -65.9 NC_001347.2 + 129644 0.66 0.566591
Target:  5'- cAUCAGCCgCGCgGUCGCaucCUGCUGUc -3'
miRNA:   3'- -UGGUCGGgGCGgUAGCGgc-GGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.