miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19900 3' -49.2 NC_004687.1 + 82519 0.66 0.999051
Target:  5'- uCGUCCAGCGCGGcgaACAacugUGcucCGCUCa -3'
miRNA:   3'- -GCAGGUUGUGUC---UGUa---GCuuuGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 117503 0.66 0.999051
Target:  5'- gGUCCGgaagcuGCGCAG-CAggugCGggGCGCc- -3'
miRNA:   3'- gCAGGU------UGUGUCuGUa---GCuuUGCGag -5'
19900 3' -49.2 NC_004687.1 + 143745 0.66 0.999051
Target:  5'- gGUCCuu-GCGGACGUCGGucagGGCGUa- -3'
miRNA:   3'- gCAGGuugUGUCUGUAGCU----UUGCGag -5'
19900 3' -49.2 NC_004687.1 + 149737 0.66 0.999051
Target:  5'- aCGUCUu-CGCuGGCGcCGAGACGgUCg -3'
miRNA:   3'- -GCAGGuuGUGuCUGUaGCUUUGCgAG- -5'
19900 3' -49.2 NC_004687.1 + 113225 0.66 0.999051
Target:  5'- aCGcCCAACAggaggccuccCAGGCGcucacCGAAGCGCUg -3'
miRNA:   3'- -GCaGGUUGU----------GUCUGUa----GCUUUGCGAg -5'
19900 3' -49.2 NC_004687.1 + 86496 0.66 0.999051
Target:  5'- aGUUCGGCAuccaucCGGACG-CGGccccGGCGCUCa -3'
miRNA:   3'- gCAGGUUGU------GUCUGUaGCU----UUGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 62635 0.66 0.999051
Target:  5'- gGUCuCAgaggcguaucGCugGGuCAUCGcgGCGCUCu -3'
miRNA:   3'- gCAG-GU----------UGugUCuGUAGCuuUGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 37978 0.66 0.998842
Target:  5'- aCGUCCGGCgGCAGcACcgCGcgcuuGCGCUg -3'
miRNA:   3'- -GCAGGUUG-UGUC-UGuaGCuu---UGCGAg -5'
19900 3' -49.2 NC_004687.1 + 113189 0.66 0.998842
Target:  5'- aGUCCGcCGgGGACA----GACGCUCg -3'
miRNA:   3'- gCAGGUuGUgUCUGUagcuUUGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 116335 0.66 0.998842
Target:  5'- gCGUCCGccguGCGCAGGCuggccgCGuAGAaGCUCg -3'
miRNA:   3'- -GCAGGU----UGUGUCUGua----GC-UUUgCGAG- -5'
19900 3' -49.2 NC_004687.1 + 113893 0.66 0.998842
Target:  5'- cCGUCaGAUGCAGGuCGUCGAucgGCUCu -3'
miRNA:   3'- -GCAGgUUGUGUCU-GUAGCUuugCGAG- -5'
19900 3' -49.2 NC_004687.1 + 50922 0.66 0.998842
Target:  5'- --cCCAcGCGCAggguGACGUCGAGACGggcCUCg -3'
miRNA:   3'- gcaGGU-UGUGU----CUGUAGCUUUGC---GAG- -5'
19900 3' -49.2 NC_004687.1 + 108327 0.66 0.998819
Target:  5'- uGUCCAcgcgucaACACGGGCuUCuGAcCGCUCc -3'
miRNA:   3'- gCAGGU-------UGUGUCUGuAGcUUuGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 134184 0.66 0.998595
Target:  5'- gGUUCGA-GCAGaACGUCGGcguCGCUCg -3'
miRNA:   3'- gCAGGUUgUGUC-UGUAGCUuu-GCGAG- -5'
19900 3' -49.2 NC_004687.1 + 85444 0.66 0.998595
Target:  5'- cCGUCCAuGCcCAGG-AUCGcccGGCGCUCg -3'
miRNA:   3'- -GCAGGU-UGuGUCUgUAGCu--UUGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 42113 0.66 0.998595
Target:  5'- cCGUCCGcGCGcCAGGgGUCGcGAugGCUg -3'
miRNA:   3'- -GCAGGU-UGU-GUCUgUAGC-UUugCGAg -5'
19900 3' -49.2 NC_004687.1 + 68302 0.66 0.998595
Target:  5'- gGUCgCGGC-UGGACcUCGAccGGCGCUCu -3'
miRNA:   3'- gCAG-GUUGuGUCUGuAGCU--UUGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 52946 0.66 0.998304
Target:  5'- aGUCCGGCGCGGAuCGUCc---UGUUCg -3'
miRNA:   3'- gCAGGUUGUGUCU-GUAGcuuuGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 7178 0.66 0.998304
Target:  5'- uGUCCAGCAC-GcCAUCGGugcCGCa- -3'
miRNA:   3'- gCAGGUUGUGuCuGUAGCUuu-GCGag -5'
19900 3' -49.2 NC_004687.1 + 53878 0.66 0.998304
Target:  5'- cCGguaCGACugGGAC-UCGAcGCGCUg -3'
miRNA:   3'- -GCag-GUUGugUCUGuAGCUuUGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.