miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19900 3' -49.2 NC_004687.1 + 1223 0.67 0.995297
Target:  5'- gGUCCAgguggguaaccAC-CAGGcCGUCGAgcuggccgcaGACGCUCg -3'
miRNA:   3'- gCAGGU-----------UGuGUCU-GUAGCU----------UUGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 1617 0.67 0.996586
Target:  5'- -aUgCAGCACcGACGcCGGGACGUUCa -3'
miRNA:   3'- gcAgGUUGUGuCUGUaGCUUUGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 4314 0.67 0.99653
Target:  5'- gGUCCGGCGCAGccuGCGUCacuuccuGAAcCGCUa -3'
miRNA:   3'- gCAGGUUGUGUC---UGUAG-------CUUuGCGAg -5'
19900 3' -49.2 NC_004687.1 + 5566 0.68 0.992645
Target:  5'- aCGUUCGGguugucguCACAGGCAgCGAccacgguguAACGCUCg -3'
miRNA:   3'- -GCAGGUU--------GUGUCUGUaGCU---------UUGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 6150 0.7 0.977239
Target:  5'- aGUCCGGCGCAccagaccGCAUCGAAGaGCUg -3'
miRNA:   3'- gCAGGUUGUGUc------UGUAGCUUUgCGAg -5'
19900 3' -49.2 NC_004687.1 + 6187 0.71 0.965539
Target:  5'- cCGUCuCGGCGCcagcgaAGACGUUGGAAucguCGCUCa -3'
miRNA:   3'- -GCAG-GUUGUG------UCUGUAGCUUU----GCGAG- -5'
19900 3' -49.2 NC_004687.1 + 7178 0.66 0.998304
Target:  5'- uGUCCAGCAC-GcCAUCGGugcCGCa- -3'
miRNA:   3'- gCAGGUUGUGuCuGUAGCUuu-GCGag -5'
19900 3' -49.2 NC_004687.1 + 7345 0.68 0.990297
Target:  5'- uGgCCGACGCucuGGACGUCcagGAGGCGCUg -3'
miRNA:   3'- gCaGGUUGUG---UCUGUAG---CUUUGCGAg -5'
19900 3' -49.2 NC_004687.1 + 10100 0.66 0.997964
Target:  5'- uCGUCUGGCccugGCAGAgUGUCGAGGaGCUCg -3'
miRNA:   3'- -GCAGGUUG----UGUCU-GUAGCUUUgCGAG- -5'
19900 3' -49.2 NC_004687.1 + 11531 0.67 0.997569
Target:  5'- -cUUCGACACGGucgaGUCGAuGCGCUa -3'
miRNA:   3'- gcAGGUUGUGUCug--UAGCUuUGCGAg -5'
19900 3' -49.2 NC_004687.1 + 13205 0.67 0.997112
Target:  5'- gGUCCGGgAUGGuCAUCGAGGCGa-- -3'
miRNA:   3'- gCAGGUUgUGUCuGUAGCUUUGCgag -5'
19900 3' -49.2 NC_004687.1 + 13501 0.67 0.997112
Target:  5'- uGggCAACGCGGGCAUCGAucUGCcCg -3'
miRNA:   3'- gCagGUUGUGUCUGUAGCUuuGCGaG- -5'
19900 3' -49.2 NC_004687.1 + 14711 0.78 0.714905
Target:  5'- gCGUCCAccGCugGGugGUCGGAGCGUc- -3'
miRNA:   3'- -GCAGGU--UGugUCugUAGCUUUGCGag -5'
19900 3' -49.2 NC_004687.1 + 15950 0.69 0.986909
Target:  5'- uCGUCCGGCGC-GACcagCGcacccaguugccgaAGACGCUCg -3'
miRNA:   3'- -GCAGGUUGUGuCUGua-GC--------------UUUGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 16496 0.78 0.68344
Target:  5'- uGUCCAGCGCGGACugAUCGGccuuGCuGCUCa -3'
miRNA:   3'- gCAGGUUGUGUCUG--UAGCUu---UG-CGAG- -5'
19900 3' -49.2 NC_004687.1 + 20468 0.73 0.919476
Target:  5'- gCGUCCGGCAcCAGGCgaGUCGAAuagguguCGUUCu -3'
miRNA:   3'- -GCAGGUUGU-GUCUG--UAGCUUu------GCGAG- -5'
19900 3' -49.2 NC_004687.1 + 22772 0.68 0.992645
Target:  5'- uGgCCAGCGCGGAgGUgGAGAC-CUCc -3'
miRNA:   3'- gCaGGUUGUGUCUgUAgCUUUGcGAG- -5'
19900 3' -49.2 NC_004687.1 + 24015 0.67 0.996235
Target:  5'- gGUCCGcuacauucgcaagcuGCGagaccaGGACGUCGAGcUGCUCg -3'
miRNA:   3'- gCAGGU---------------UGUg-----UCUGUAGCUUuGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 25824 0.72 0.935975
Target:  5'- aCGUCCGACAUGGGCGUUccucCGUUCg -3'
miRNA:   3'- -GCAGGUUGUGUCUGUAGcuuuGCGAG- -5'
19900 3' -49.2 NC_004687.1 + 31683 0.71 0.965539
Target:  5'- gCGUCC--CGgAGGCGUCGgcAUGCUCu -3'
miRNA:   3'- -GCAGGuuGUgUCUGUAGCuuUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.