miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19905 3' -54.3 NC_004687.1 + 73878 0.66 0.950676
Target:  5'- gCUGUccGGCAucgcucaGCAGGAcCCCCGGcUCu -3'
miRNA:   3'- -GACA--UCGUuug----CGUUCUcGGGGCC-AG- -5'
19905 3' -54.3 NC_004687.1 + 85580 0.66 0.950676
Target:  5'- gCUGU-GCGgcGACGCcGGAGC-CgGGUCg -3'
miRNA:   3'- -GACAuCGU--UUGCGuUCUCGgGgCCAG- -5'
19905 3' -54.3 NC_004687.1 + 34043 0.66 0.946345
Target:  5'- ---aGGCcuggAGGCGCGAGGGCacgauCCCGGUUc -3'
miRNA:   3'- gacaUCG----UUUGCGUUCUCG-----GGGCCAG- -5'
19905 3' -54.3 NC_004687.1 + 20860 0.66 0.946345
Target:  5'- -cGUGGCc-GCGCGccGGGCCCUGGcCc -3'
miRNA:   3'- gaCAUCGuuUGCGUu-CUCGGGGCCaG- -5'
19905 3' -54.3 NC_004687.1 + 80444 0.66 0.946345
Target:  5'- ---cGGCGGGCcCAGGcGCCCCGGcCu -3'
miRNA:   3'- gacaUCGUUUGcGUUCuCGGGGCCaG- -5'
19905 3' -54.3 NC_004687.1 + 106276 0.66 0.946345
Target:  5'- gCUGaUGGCGAugGCcgggguGGAGCCggUGGUCu -3'
miRNA:   3'- -GAC-AUCGUUugCGu-----UCUCGGg-GCCAG- -5'
19905 3' -54.3 NC_004687.1 + 9404 0.66 0.941772
Target:  5'- ---cAGCGAgaccacccaGCGcCAAGAGaccuaCCCGGUCa -3'
miRNA:   3'- gacaUCGUU---------UGC-GUUCUCg----GGGCCAG- -5'
19905 3' -54.3 NC_004687.1 + 105204 0.66 0.941772
Target:  5'- -gGU-GCccGCGCuGGAGaCCUCGGUCa -3'
miRNA:   3'- gaCAuCGuuUGCGuUCUC-GGGGCCAG- -5'
19905 3' -54.3 NC_004687.1 + 68105 0.66 0.941772
Target:  5'- ---aAGCAGAUGCAGGccgaGGuCCCCGGc- -3'
miRNA:   3'- gacaUCGUUUGCGUUC----UC-GGGGCCag -5'
19905 3' -54.3 NC_004687.1 + 61507 0.66 0.935459
Target:  5'- gCUGUcGCAGAucuCGCAgggcuggggcgggcAGAGCUCCGG-Cg -3'
miRNA:   3'- -GACAuCGUUU---GCGU--------------UCUCGGGGCCaG- -5'
19905 3' -54.3 NC_004687.1 + 149581 0.66 0.931886
Target:  5'- cCUGUucgAGCGggacacGACGCGccggacgucGGccucgacgauccGGCCCCGGUCg -3'
miRNA:   3'- -GACA---UCGU------UUGCGU---------UC------------UCGGGGCCAG- -5'
19905 3' -54.3 NC_004687.1 + 123429 0.66 0.931886
Target:  5'- -cGU--CAGGC-CAGGAGUCCUGGUCg -3'
miRNA:   3'- gaCAucGUUUGcGUUCUCGGGGCCAG- -5'
19905 3' -54.3 NC_004687.1 + 2587 0.66 0.931886
Target:  5'- --uUGGCGAcCGCAcccccGGAGCCuCCGGg- -3'
miRNA:   3'- gacAUCGUUuGCGU-----UCUCGG-GGCCag -5'
19905 3' -54.3 NC_004687.1 + 7614 0.66 0.931886
Target:  5'- -gGUGGCGAGCGCAA-----CCGGUCg -3'
miRNA:   3'- gaCAUCGUUUGCGUUcucggGGCCAG- -5'
19905 3' -54.3 NC_004687.1 + 7830 0.66 0.931366
Target:  5'- -cGU-GCGcGCGguAGAgcaucgagagcuuGCCCCGGUCc -3'
miRNA:   3'- gaCAuCGUuUGCguUCU-------------CGGGGCCAG- -5'
19905 3' -54.3 NC_004687.1 + 61083 0.67 0.926572
Target:  5'- -gGUGGCcAGCGCGagcAGGGCCUCcucGUCg -3'
miRNA:   3'- gaCAUCGuUUGCGU---UCUCGGGGc--CAG- -5'
19905 3' -54.3 NC_004687.1 + 15995 0.67 0.926572
Target:  5'- -cGUcGGCGuugagGAUGUAGGAGCCCUuGUCg -3'
miRNA:   3'- gaCA-UCGU-----UUGCGUUCUCGGGGcCAG- -5'
19905 3' -54.3 NC_004687.1 + 152926 0.67 0.921009
Target:  5'- -cGUGGCAcaagcaggGGCGCAAGGGCUaugccaucuucaUCGGUg -3'
miRNA:   3'- gaCAUCGU--------UUGCGUUCUCGG------------GGCCAg -5'
19905 3' -54.3 NC_004687.1 + 13170 0.67 0.921009
Target:  5'- -gGUGGCGAAgaccaGCGGGAuauaggggaaGCCCgGGUCc -3'
miRNA:   3'- gaCAUCGUUUg----CGUUCU----------CGGGgCCAG- -5'
19905 3' -54.3 NC_004687.1 + 136170 0.67 0.921009
Target:  5'- -gGUGGCGAugGCGgucauuucGGGGCUCCuuGGUg -3'
miRNA:   3'- gaCAUCGUUugCGU--------UCUCGGGG--CCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.