miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19914 3' -59.9 NC_004687.1 + 129654 0.66 0.792617
Target:  5'- ---uGGGCCGGuGGCCgaUCCGGGGGuuguAGGc -3'
miRNA:   3'- acucUCUGGCC-UCGG--AGGCUCCC----UCC- -5'
19914 3' -59.9 NC_004687.1 + 153324 0.66 0.792617
Target:  5'- cUGGucGGCCccGGAGgCUCCGGGGGugcGGu -3'
miRNA:   3'- -ACUcuCUGG--CCUCgGAGGCUCCCu--CC- -5'
19914 3' -59.9 NC_004687.1 + 8974 0.66 0.792617
Target:  5'- -aGGAGcCCGGAcagaaccuGCCUCCGAcGGuGGc -3'
miRNA:   3'- acUCUCuGGCCU--------CGGAGGCUcCCuCC- -5'
19914 3' -59.9 NC_004687.1 + 101945 0.66 0.792617
Target:  5'- aGAGAcGACCGGAgGCCaggCCGGagaaucggcgccGGGcGGa -3'
miRNA:   3'- aCUCU-CUGGCCU-CGGa--GGCU------------CCCuCC- -5'
19914 3' -59.9 NC_004687.1 + 68962 0.66 0.783804
Target:  5'- cUGGGAG-CCGGuGCUagagcugcagUUCGAGGGccGGGu -3'
miRNA:   3'- -ACUCUCuGGCCuCGG----------AGGCUCCC--UCC- -5'
19914 3' -59.9 NC_004687.1 + 48545 0.66 0.774865
Target:  5'- cGcGAGACCaaGGAGCCggucuGGGAGGc -3'
miRNA:   3'- aCuCUCUGG--CCUCGGaggcuCCCUCC- -5'
19914 3' -59.9 NC_004687.1 + 62284 0.66 0.747369
Target:  5'- aGAGGGAguccauguCCGGAGCCUuCCGuuuGGccGGa -3'
miRNA:   3'- aCUCUCU--------GGCCUCGGA-GGCu--CCcuCC- -5'
19914 3' -59.9 NC_004687.1 + 130969 0.68 0.680311
Target:  5'- gUGGGAgGACCGGGGUCUCCGgcccucccgucAGGccucAGGc -3'
miRNA:   3'- -ACUCU-CUGGCCUCGGAGGC-----------UCCc---UCC- -5'
19914 3' -59.9 NC_004687.1 + 118985 0.68 0.680311
Target:  5'- cGAGcGGccACCGGcgaAGCCUCC--GGGAGGa -3'
miRNA:   3'- aCUC-UC--UGGCC---UCGGAGGcuCCCUCC- -5'
19914 3' -59.9 NC_004687.1 + 46192 0.68 0.67052
Target:  5'- gGAGcAGGCC-GAGCUgauUCgCGAGGGAGa -3'
miRNA:   3'- aCUC-UCUGGcCUCGG---AG-GCUCCCUCc -5'
19914 3' -59.9 NC_004687.1 + 60810 0.68 0.650858
Target:  5'- -aGGuGuacuCCGGGGCCUggugCCgGAGGGAGGu -3'
miRNA:   3'- acUCuCu---GGCCUCGGA----GG-CUCCCUCC- -5'
19914 3' -59.9 NC_004687.1 + 57009 0.69 0.621279
Target:  5'- cGAGuuuuccagccuGACCGGGGUCUCCGGGcuGGGc -3'
miRNA:   3'- aCUCu----------CUGGCCUCGGAGGCUCccUCC- -5'
19914 3' -59.9 NC_004687.1 + 42566 0.69 0.621279
Target:  5'- cGGGAGcCCGGAGCCUuCCGGcugucgaaGAGGc -3'
miRNA:   3'- aCUCUCuGGCCUCGGA-GGCUcc------CUCC- -5'
19914 3' -59.9 NC_004687.1 + 142681 0.69 0.621279
Target:  5'- -cGGAuGGCCGcAGCCUUCGAGGGGa- -3'
miRNA:   3'- acUCU-CUGGCcUCGGAGGCUCCCUcc -5'
19914 3' -59.9 NC_004687.1 + 68080 0.69 0.611426
Target:  5'- uUGA-AGGCCGG-GCCUCCGGGGuccauGGc -3'
miRNA:   3'- -ACUcUCUGGCCuCGGAGGCUCCcu---CC- -5'
19914 3' -59.9 NC_004687.1 + 75228 0.69 0.591768
Target:  5'- gGAGGGAUCGGcAGCUguUCCGGuGGGAc- -3'
miRNA:   3'- aCUCUCUGGCC-UCGG--AGGCU-CCCUcc -5'
19914 3' -59.9 NC_004687.1 + 75478 0.69 0.57222
Target:  5'- -uGGAGGCCGGGgcGCCUgggcCCGccGGGGGGa -3'
miRNA:   3'- acUCUCUGGCCU--CGGA----GGCu-CCCUCC- -5'
19914 3' -59.9 NC_004687.1 + 55128 0.71 0.477669
Target:  5'- --uGGGGCUGGAcuCCUCCGAGGGccAGGc -3'
miRNA:   3'- acuCUCUGGCCUc-GGAGGCUCCC--UCC- -5'
19914 3' -59.9 NC_004687.1 + 24118 1.09 0.001399
Target:  5'- gUGAGAGACCGGAGCCUCCGAGGGAGGu -3'
miRNA:   3'- -ACUCUCUGGCCUCGGAGGCUCCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.