miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19914 5' -59.5 NC_004687.1 + 134960 0.66 0.741151
Target:  5'- -uCCUGCCagcucgUCGGGGGuCAGCUGGg--- -3'
miRNA:   3'- uuGGAUGG------AGCCUCC-GUCGGCCacaa -5'
19914 5' -59.5 NC_004687.1 + 146096 0.66 0.731407
Target:  5'- -cUCUACCgcu--GGCAGCCGGUGg- -3'
miRNA:   3'- uuGGAUGGagccuCCGUCGGCCACaa -5'
19914 5' -59.5 NC_004687.1 + 102694 0.66 0.721579
Target:  5'- gGAUCUggGCgUCGGAGGCGGgguaGGUGUUc -3'
miRNA:   3'- -UUGGA--UGgAGCCUCCGUCgg--CCACAA- -5'
19914 5' -59.5 NC_004687.1 + 140881 0.66 0.721579
Target:  5'- aGACCUcgguacguccaGCCUUGGcGGCggcgucgaAGCUGGUGUg -3'
miRNA:   3'- -UUGGA-----------UGGAGCCuCCG--------UCGGCCACAa -5'
19914 5' -59.5 NC_004687.1 + 1570 0.66 0.701701
Target:  5'- uGACCUcCC-CGGAGGUaucgaccgAGCCaGGUGUc -3'
miRNA:   3'- -UUGGAuGGaGCCUCCG--------UCGG-CCACAa -5'
19914 5' -59.5 NC_004687.1 + 104036 0.67 0.681592
Target:  5'- gAGCCUGCCUgaGGAGGgcgcccaGGCCGGg--- -3'
miRNA:   3'- -UUGGAUGGAg-CCUCCg------UCGGCCacaa -5'
19914 5' -59.5 NC_004687.1 + 111848 0.67 0.681592
Target:  5'- cGCCUggGCCUgGcGGGCcaAGCCGGUGg- -3'
miRNA:   3'- uUGGA--UGGAgCcUCCG--UCGGCCACaa -5'
19914 5' -59.5 NC_004687.1 + 18606 0.67 0.651145
Target:  5'- gGAUCUGCCgggCGGAGGCuucccagcacuGCCGGg--- -3'
miRNA:   3'- -UUGGAUGGa--GCCUCCGu----------CGGCCacaa -5'
19914 5' -59.5 NC_004687.1 + 22180 0.68 0.614448
Target:  5'- gGACCUgguggACCUCGGAGGUcagucccaggucgugGGCCacauGGUGg- -3'
miRNA:   3'- -UUGGA-----UGGAGCCUCCG---------------UCGG----CCACaa -5'
19914 5' -59.5 NC_004687.1 + 128012 0.69 0.559822
Target:  5'- aGACCUGCCUCaacgagauGGAGuCcGCCGGUGg- -3'
miRNA:   3'- -UUGGAUGGAG--------CCUCcGuCGGCCACaa -5'
19914 5' -59.5 NC_004687.1 + 12978 0.69 0.548839
Target:  5'- aGGCCUgguggucggguugACCUCGGGgucagcaaacGGCAGCgCGGUGa- -3'
miRNA:   3'- -UUGGA-------------UGGAGCCU----------CCGUCG-GCCACaa -5'
19914 5' -59.5 NC_004687.1 + 131801 0.69 0.520231
Target:  5'- cACCUcCCUCGGAGGCu-CCGGUc-- -3'
miRNA:   3'- uUGGAuGGAGCCUCCGucGGCCAcaa -5'
19914 5' -59.5 NC_004687.1 + 81242 0.7 0.491272
Target:  5'- cACCUACCggugCGGuacGGCGgacGCCGGUGg- -3'
miRNA:   3'- uUGGAUGGa---GCCu--CCGU---CGGCCACaa -5'
19914 5' -59.5 NC_004687.1 + 115605 0.71 0.418078
Target:  5'- cGACCUGCCUCGGaAGGUuuCgGGUGg- -3'
miRNA:   3'- -UUGGAUGGAGCC-UCCGucGgCCACaa -5'
19914 5' -59.5 NC_004687.1 + 108883 0.71 0.409401
Target:  5'- cGCCUACCUCaacGGCAGCCGGg--- -3'
miRNA:   3'- uUGGAUGGAGccuCCGUCGGCCacaa -5'
19914 5' -59.5 NC_004687.1 + 36925 0.72 0.367743
Target:  5'- cGACCgguCCUccCGGAGGCuucGCCGGUGg- -3'
miRNA:   3'- -UUGGau-GGA--GCCUCCGu--CGGCCACaa -5'
19914 5' -59.5 NC_004687.1 + 24152 1.03 0.002639
Target:  5'- gAACCUACCUCGGAGGCAGCCGGUGUUa -3'
miRNA:   3'- -UUGGAUGGAGCCUCCGUCGGCCACAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.