miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19924 5' -58 NC_004687.1 + 70084 0.66 0.841812
Target:  5'- ---aUCCGGAugccgUCGaGGGU-GCCACCGg -3'
miRNA:   3'- aacaAGGUCU-----AGC-CCCAcCGGUGGCg -5'
19924 5' -58 NC_004687.1 + 117333 0.66 0.841812
Target:  5'- cUGUUCCAGGUgaacacccCGGcGGgcaccaagcUGGCCaugcgguucagGCCGCg -3'
miRNA:   3'- aACAAGGUCUA--------GCC-CC---------ACCGG-----------UGGCG- -5'
19924 5' -58 NC_004687.1 + 47774 0.66 0.833673
Target:  5'- -aGUUCgGGAUUGaucgcggccaGGGUGGCUgcGCCGg -3'
miRNA:   3'- aaCAAGgUCUAGC----------CCCACCGG--UGGCg -5'
19924 5' -58 NC_004687.1 + 58015 0.66 0.833673
Target:  5'- ---cUCUGGGagUCGGGuGUGGCCGgaCGCg -3'
miRNA:   3'- aacaAGGUCU--AGCCC-CACCGGUg-GCG- -5'
19924 5' -58 NC_004687.1 + 148786 0.66 0.825354
Target:  5'- --aUUCCGGAcgacucucUC-GGGUGGCCAUUGUu -3'
miRNA:   3'- aacAAGGUCU--------AGcCCCACCGGUGGCG- -5'
19924 5' -58 NC_004687.1 + 130974 0.66 0.825354
Target:  5'- cUGacCCGGAUCGGGcUGacgaccgguGCCACCGg -3'
miRNA:   3'- aACaaGGUCUAGCCCcAC---------CGGUGGCg -5'
19924 5' -58 NC_004687.1 + 73862 0.66 0.822825
Target:  5'- aUGaUUCCGG-UCGGGuUGccgccggacgcgcuGCCACCGCu -3'
miRNA:   3'- aAC-AAGGUCuAGCCCcAC--------------CGGUGGCG- -5'
19924 5' -58 NC_004687.1 + 29429 0.66 0.816863
Target:  5'- -----gCGGAUaCuGGGUGGCCAgCGCg -3'
miRNA:   3'- aacaagGUCUA-GcCCCACCGGUgGCG- -5'
19924 5' -58 NC_004687.1 + 60925 0.66 0.816863
Target:  5'- aUGgacgUCCAGuucGUCGGcGUGGCC-CCGa -3'
miRNA:   3'- aACa---AGGUC---UAGCCcCACCGGuGGCg -5'
19924 5' -58 NC_004687.1 + 48104 0.66 0.816863
Target:  5'- ----aCCAG-UUGGGGaacugcgugaaGGCCACCGCc -3'
miRNA:   3'- aacaaGGUCuAGCCCCa----------CCGGUGGCG- -5'
19924 5' -58 NC_004687.1 + 63549 0.66 0.816863
Target:  5'- -cGUcaUCCAGGUCGacGGUGacGCUACCGUc -3'
miRNA:   3'- aaCA--AGGUCUAGCc-CCAC--CGGUGGCG- -5'
19924 5' -58 NC_004687.1 + 25761 0.66 0.816863
Target:  5'- -cGgaCCuGAUCGGGGaugcgUGGCUgcgACUGCg -3'
miRNA:   3'- aaCaaGGuCUAGCCCC-----ACCGG---UGGCG- -5'
19924 5' -58 NC_004687.1 + 29981 0.66 0.816004
Target:  5'- cUUG-UCCAGGUaggccuUGGGGaugcccaggugcuUGGCCagGCCGCg -3'
miRNA:   3'- -AACaAGGUCUA------GCCCC-------------ACCGG--UGGCG- -5'
19924 5' -58 NC_004687.1 + 139446 0.66 0.808206
Target:  5'- -gGUUgCGGGUCuGGGGgacGGUCACCcggGCg -3'
miRNA:   3'- aaCAAgGUCUAG-CCCCa--CCGGUGG---CG- -5'
19924 5' -58 NC_004687.1 + 63182 0.66 0.808206
Target:  5'- -aGUUCCuGGAcCaGGGcGaGCCGCCGCu -3'
miRNA:   3'- aaCAAGG-UCUaGcCCCaC-CGGUGGCG- -5'
19924 5' -58 NC_004687.1 + 46060 0.66 0.808206
Target:  5'- cUGUUgCAGGUCGGgcaccacucGGUGGCgGgCCGg -3'
miRNA:   3'- aACAAgGUCUAGCC---------CCACCGgU-GGCg -5'
19924 5' -58 NC_004687.1 + 100581 0.66 0.806456
Target:  5'- cUGgaCCAGGUCuucgaauguccaGGGUGuGCCACCGa -3'
miRNA:   3'- aACaaGGUCUAGc-----------CCCAC-CGGUGGCg -5'
19924 5' -58 NC_004687.1 + 13224 0.66 0.802937
Target:  5'- gUGcgCCGGAUCGGcuauuuccccucgaaGGcugcGGCCAuCCGCg -3'
miRNA:   3'- aACaaGGUCUAGCC---------------CCa---CCGGU-GGCG- -5'
19924 5' -58 NC_004687.1 + 121156 0.66 0.799393
Target:  5'- -gGggCCuGcUCGGGGacggugaacuccUGGCCACCaGCg -3'
miRNA:   3'- aaCaaGGuCuAGCCCC------------ACCGGUGG-CG- -5'
19924 5' -58 NC_004687.1 + 68622 0.66 0.799393
Target:  5'- gUUGcgCCGGAUCaGGGUguugcgcaGGCCgACCGg -3'
miRNA:   3'- -AACaaGGUCUAGcCCCA--------CCGG-UGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.