miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19958 3' -57.1 NC_004687.1 + 43838 0.66 0.900739
Target:  5'- uGGUCCAGGaccgcGCGCacgUUGAGACgaCGc -3'
miRNA:   3'- gCCAGGUCC-----CGCGga-AGCUUUGgaGC- -5'
19958 3' -57.1 NC_004687.1 + 8021 0.66 0.900739
Target:  5'- -cGUCCGGGGUGCCcUUGggG--UCGg -3'
miRNA:   3'- gcCAGGUCCCGCGGaAGCuuUggAGC- -5'
19958 3' -57.1 NC_004687.1 + 83980 0.66 0.900739
Target:  5'- uGGUCCGgcucggccucguGGGCGUagcugUCGAcacCCUCGg -3'
miRNA:   3'- gCCAGGU------------CCCGCGga---AGCUuu-GGAGC- -5'
19958 3' -57.1 NC_004687.1 + 30319 0.66 0.900739
Target:  5'- cCGGUgCu-GGCGCCcUCGGccagGGCCUCa -3'
miRNA:   3'- -GCCAgGucCCGCGGaAGCU----UUGGAGc -5'
19958 3' -57.1 NC_004687.1 + 67260 0.66 0.900739
Target:  5'- cCGGggUguGGGUGCCccacagcgcgUCGAucGCCUCGg -3'
miRNA:   3'- -GCCa-GguCCCGCGGa---------AGCUu-UGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 15166 0.66 0.89436
Target:  5'- aGGUCCucgacgAGGGCuucaauGCCUgagacgCGGAucacauGCCUCGg -3'
miRNA:   3'- gCCAGG------UCCCG------CGGAa-----GCUU------UGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 96051 0.66 0.89436
Target:  5'- uGGgCCAGGGC-UCUUCGuauGCCUgGu -3'
miRNA:   3'- gCCaGGUCCCGcGGAAGCuu-UGGAgC- -5'
19958 3' -57.1 NC_004687.1 + 130824 0.66 0.89436
Target:  5'- uCGGU---GGGCGCCgUCGugcGCCUCa -3'
miRNA:   3'- -GCCAgguCCCGCGGaAGCuu-UGGAGc -5'
19958 3' -57.1 NC_004687.1 + 81835 0.66 0.89436
Target:  5'- uCGGUCCGGaGGCGCUgcCGAGucGCgggCGg -3'
miRNA:   3'- -GCCAGGUC-CCGCGGaaGCUU--UGga-GC- -5'
19958 3' -57.1 NC_004687.1 + 120165 0.66 0.89436
Target:  5'- uGcGUCCGGGGUGCgggu-AGACCUCGc -3'
miRNA:   3'- gC-CAGGUCCCGCGgaagcUUUGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 73994 0.66 0.88776
Target:  5'- cCGG-CCAGGGCGgUaUCGGuGGCgUCGg -3'
miRNA:   3'- -GCCaGGUCCCGCgGaAGCU-UUGgAGC- -5'
19958 3' -57.1 NC_004687.1 + 42672 0.66 0.887088
Target:  5'- gCGGUCUgcaccagcgcuucGGuGaGCGCCUggGAGGCCUCc -3'
miRNA:   3'- -GCCAGG-------------UC-C-CGCGGAagCUUUGGAGc -5'
19958 3' -57.1 NC_004687.1 + 141951 0.66 0.880942
Target:  5'- cCGGUggccgaCGGGGCGaCCguccUCGugcucGACCUCGg -3'
miRNA:   3'- -GCCAg-----GUCCCGC-GGa---AGCu----UUGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 118161 0.66 0.880942
Target:  5'- aGGU---GGGCGCCUUCGAcuucACCggCGa -3'
miRNA:   3'- gCCAgguCCCGCGGAAGCUu---UGGa-GC- -5'
19958 3' -57.1 NC_004687.1 + 57312 0.66 0.87391
Target:  5'- uCGGUCCAGGGCaCCgaCGAAAa---- -3'
miRNA:   3'- -GCCAGGUCCCGcGGaaGCUUUggagc -5'
19958 3' -57.1 NC_004687.1 + 45242 0.66 0.87391
Target:  5'- uCGGcgCCAGgcGGCGCCgUCGGGcAgCUCGg -3'
miRNA:   3'- -GCCa-GGUC--CCGCGGaAGCUU-UgGAGC- -5'
19958 3' -57.1 NC_004687.1 + 117522 0.66 0.86667
Target:  5'- aGGUgCGGGGCGCCc-CGGguGGCCcaggCGg -3'
miRNA:   3'- gCCAgGUCCCGCGGaaGCU--UUGGa---GC- -5'
19958 3' -57.1 NC_004687.1 + 63026 0.66 0.86667
Target:  5'- cCGGUCCAGucCGaCCgccaGAGGCCUUGg -3'
miRNA:   3'- -GCCAGGUCccGC-GGaag-CUUUGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 71710 0.67 0.859225
Target:  5'- uGG-CCAGGGUGaggUCGgAGAUCUCGa -3'
miRNA:   3'- gCCaGGUCCCGCggaAGC-UUUGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 92671 0.67 0.859225
Target:  5'- gGGUCCA-GGUGCCgUCGGgcugcGGCgUCGa -3'
miRNA:   3'- gCCAGGUcCCGCGGaAGCU-----UUGgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.