miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19958 3' -57.1 NC_004687.1 + 305 0.68 0.775008
Target:  5'- aCGG-CCAGcuuGGCGgCUUCGAAcAUCUCGc -3'
miRNA:   3'- -GCCaGGUC---CCGCgGAAGCUU-UGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 524 1.08 0.003008
Target:  5'- cCGGUCCAGGGCGCCUUCGAAACCUCGc -3'
miRNA:   3'- -GCCAGGUCCCGCGGAAGCUUUGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 1076 0.68 0.784119
Target:  5'- uGGccaUCCAGGGCGCCgagcugaUGAAGCaUCGc -3'
miRNA:   3'- gCC---AGGUCCCGCGGaa-----GCUUUGgAGC- -5'
19958 3' -57.1 NC_004687.1 + 3860 0.68 0.793098
Target:  5'- uCGGUggCCGGGGUGgCUgggcccuuggCGAGcACCUCGg -3'
miRNA:   3'- -GCCA--GGUCCCGCgGAa---------GCUU-UGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 7677 0.71 0.608312
Target:  5'- -aGUCCAGGGUGUggUCGGGAaaguCCUCGg -3'
miRNA:   3'- gcCAGGUCCCGCGgaAGCUUU----GGAGC- -5'
19958 3' -57.1 NC_004687.1 + 8021 0.66 0.900739
Target:  5'- -cGUCCGGGGUGCCcUUGggG--UCGg -3'
miRNA:   3'- gcCAGGUCCCGCGGaAGCuuUggAGC- -5'
19958 3' -57.1 NC_004687.1 + 9527 0.68 0.784119
Target:  5'- gCGG-CCAGcGGCGCCccggcgUCGGgauaGGCCUUGc -3'
miRNA:   3'- -GCCaGGUC-CCGCGGa-----AGCU----UUGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 15166 0.66 0.89436
Target:  5'- aGGUCCucgacgAGGGCuucaauGCCUgagacgCGGAucacauGCCUCGg -3'
miRNA:   3'- gCCAGG------UCCCG------CGGAa-----GCUU------UGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 18803 0.68 0.801936
Target:  5'- uGGcCCAGGGCaucgcuGCCgaCGAGACCa-- -3'
miRNA:   3'- gCCaGGUCCCG------CGGaaGCUUUGGagc -5'
19958 3' -57.1 NC_004687.1 + 23016 0.67 0.835729
Target:  5'- aGGUCacgCAGGGCGCgCagCGucGCCUUGu -3'
miRNA:   3'- gCCAG---GUCCCGCG-GaaGCuuUGGAGC- -5'
19958 3' -57.1 NC_004687.1 + 24431 0.71 0.648512
Target:  5'- uCGG-CCAcGGCGCCUUCGAggUCa-- -3'
miRNA:   3'- -GCCaGGUcCCGCGGAAGCUuuGGagc -5'
19958 3' -57.1 NC_004687.1 + 26052 0.68 0.775008
Target:  5'- aCGGuUCCGGGGCuCCUUCGc--CUUCa -3'
miRNA:   3'- -GCC-AGGUCCCGcGGAAGCuuuGGAGc -5'
19958 3' -57.1 NC_004687.1 + 29706 0.71 0.617349
Target:  5'- gCGGUCCuccagcuccucccAGGGCGCCaccUCGAucguCUUCGg -3'
miRNA:   3'- -GCCAGG-------------UCCCGCGGa--AGCUuu--GGAGC- -5'
19958 3' -57.1 NC_004687.1 + 30319 0.66 0.900739
Target:  5'- cCGGUgCu-GGCGCCcUCGGccagGGCCUCa -3'
miRNA:   3'- -GCCAgGucCCGCGGaAGCU----UUGGAGc -5'
19958 3' -57.1 NC_004687.1 + 31444 0.68 0.810627
Target:  5'- gCGGUCCAGGaugGCCUUgaCGuacuCCUCGg -3'
miRNA:   3'- -GCCAGGUCCcg-CGGAA--GCuuu-GGAGC- -5'
19958 3' -57.1 NC_004687.1 + 33878 0.67 0.851583
Target:  5'- uGGUCCccgAGGGUGaCUUCGAcggcuACCUgGa -3'
miRNA:   3'- gCCAGG---UCCCGCgGAAGCUu----UGGAgC- -5'
19958 3' -57.1 NC_004687.1 + 35444 0.67 0.827531
Target:  5'- aGGUCCAgGGGCGCgUU---GGCCgUCGg -3'
miRNA:   3'- gCCAGGU-CCCGCGgAAgcuUUGG-AGC- -5'
19958 3' -57.1 NC_004687.1 + 35603 0.67 0.859225
Target:  5'- uCGGUCUcgugguGGuGGCGCCggUCGguGCCgUCGc -3'
miRNA:   3'- -GCCAGG------UC-CCGCGGa-AGCuuUGG-AGC- -5'
19958 3' -57.1 NC_004687.1 + 39220 0.74 0.4362
Target:  5'- gGGUCC-GGGUGCCgaUCGAGACCa-- -3'
miRNA:   3'- gCCAGGuCCCGCGGa-AGCUUUGGagc -5'
19958 3' -57.1 NC_004687.1 + 42356 0.67 0.825037
Target:  5'- gGGUCCGGuGGUuuucgaccgcaucgGCCUUCGuuGGCCUgGc -3'
miRNA:   3'- gCCAGGUC-CCG--------------CGGAAGCu-UUGGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.