miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19958 5' -52.6 NC_004687.1 + 106579 0.66 0.98272
Target:  5'- gCUCACccugGUCGUuaCGGCucuGGUCGCCCg-- -3'
miRNA:   3'- -GAGUG----UAGUA--GUCGu--CUAGCGGGacc -5'
19958 5' -52.6 NC_004687.1 + 26980 0.66 0.98272
Target:  5'- aCUCAC-UCAcUCaaAGgAGAUCGCCaUGGg -3'
miRNA:   3'- -GAGUGuAGU-AG--UCgUCUAGCGGgACC- -5'
19958 5' -52.6 NC_004687.1 + 75843 0.66 0.980639
Target:  5'- aUCGCAUCcugGUCuGUAGAUCcagaCCCUGa -3'
miRNA:   3'- gAGUGUAG---UAGuCGUCUAGc---GGGACc -5'
19958 5' -52.6 NC_004687.1 + 101349 0.66 0.980639
Target:  5'- --gACcUCGUCGGCGuccucGAuguugaccuucUCGCCCUGGa -3'
miRNA:   3'- gagUGuAGUAGUCGU-----CU-----------AGCGGGACC- -5'
19958 5' -52.6 NC_004687.1 + 143997 0.66 0.980639
Target:  5'- --gGCAUUGUCAucGCGcucgccGUCGCCCUGGu -3'
miRNA:   3'- gagUGUAGUAGU--CGUc-----UAGCGGGACC- -5'
19958 5' -52.6 NC_004687.1 + 1684 0.66 0.980639
Target:  5'- -aCGCAUC--CGGCAGAaCGCCuuCUGGc -3'
miRNA:   3'- gaGUGUAGuaGUCGUCUaGCGG--GACC- -5'
19958 5' -52.6 NC_004687.1 + 69183 0.66 0.978376
Target:  5'- aUCACgacgagGUCAUCcccggcgGGCAGGccacccagaccggugCGCCCUGGg -3'
miRNA:   3'- gAGUG------UAGUAG-------UCGUCUa--------------GCGGGACC- -5'
19958 5' -52.6 NC_004687.1 + 19611 0.66 0.978376
Target:  5'- --gACAUCG-CGGCGGGccuggaCGUCCUGGg -3'
miRNA:   3'- gagUGUAGUaGUCGUCUa-----GCGGGACC- -5'
19958 5' -52.6 NC_004687.1 + 74212 0.66 0.978376
Target:  5'- -cUugGUCAgggucCAGCGG-UCGCCCaGGg -3'
miRNA:   3'- gaGugUAGUa----GUCGUCuAGCGGGaCC- -5'
19958 5' -52.6 NC_004687.1 + 104673 0.66 0.978376
Target:  5'- cCUCcaGCAggaCGUUAcGCAGGaUGCCCUGGu -3'
miRNA:   3'- -GAG--UGUa--GUAGU-CGUCUaGCGGGACC- -5'
19958 5' -52.6 NC_004687.1 + 133522 0.66 0.975923
Target:  5'- cCUCACcuucUCucgCGGCGGAuuUCGCCCUc- -3'
miRNA:   3'- -GAGUGu---AGua-GUCGUCU--AGCGGGAcc -5'
19958 5' -52.6 NC_004687.1 + 140087 0.66 0.975923
Target:  5'- -cCGCGaCGUCGGUgaGUCgGCCCUGGc -3'
miRNA:   3'- gaGUGUaGUAGUCGucUAG-CGGGACC- -5'
19958 5' -52.6 NC_004687.1 + 10035 0.66 0.975149
Target:  5'- -cCGCAaCAUCGGCGuggucaccacuuucGGUCGCCC-GGu -3'
miRNA:   3'- gaGUGUaGUAGUCGU--------------CUAGCGGGaCC- -5'
19958 5' -52.6 NC_004687.1 + 120689 0.66 0.974357
Target:  5'- --uGCAgggccugCGUCAGCGGGUCGaugaucugcugguacUCCUGGg -3'
miRNA:   3'- gagUGUa------GUAGUCGUCUAGC---------------GGGACC- -5'
19958 5' -52.6 NC_004687.1 + 144120 0.66 0.973272
Target:  5'- --gGCGUCuucCAGCAGcgCGCucCCUGGu -3'
miRNA:   3'- gagUGUAGua-GUCGUCuaGCG--GGACC- -5'
19958 5' -52.6 NC_004687.1 + 150953 0.67 0.970417
Target:  5'- -cCGCcUgAUCAGCAGAgagaugCGCCgaGGa -3'
miRNA:   3'- gaGUGuAgUAGUCGUCUa-----GCGGgaCC- -5'
19958 5' -52.6 NC_004687.1 + 90255 0.67 0.966387
Target:  5'- --gGCGUCAUCguguacgaggagacGGUAGAggCGCCCUcGGg -3'
miRNA:   3'- gagUGUAGUAG--------------UCGUCUa-GCGGGA-CC- -5'
19958 5' -52.6 NC_004687.1 + 140287 0.67 0.964063
Target:  5'- gCUCACcccgGUCGGCucGAUCGUCCUGc -3'
miRNA:   3'- -GAGUGuag-UAGUCGu-CUAGCGGGACc -5'
19958 5' -52.6 NC_004687.1 + 126018 0.67 0.960552
Target:  5'- cCUCaggGCGUCGUCGGUAGG-CGUCgaGGc -3'
miRNA:   3'- -GAG---UGUAGUAGUCGUCUaGCGGgaCC- -5'
19958 5' -52.6 NC_004687.1 + 137752 0.67 0.960552
Target:  5'- --aACAUCAUCGGCGGGgagaccuaCGUCCagUGGa -3'
miRNA:   3'- gagUGUAGUAGUCGUCUa-------GCGGG--ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.