miRNA display CGI


Results 1 - 20 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19976 3' -59.6 NC_004687.1 + 49481 0.66 0.79156
Target:  5'- ---cGGCggUGGCCGgUCUCGggaUCGCCg -3'
miRNA:   3'- cuuaCCGggACCGGCaGGAGC---AGCGG- -5'
19976 3' -59.6 NC_004687.1 + 20218 0.66 0.79156
Target:  5'- gGGAUGGCCacgGcGCCGaagUCCUCGaucCGUCu -3'
miRNA:   3'- -CUUACCGGga-C-CGGC---AGGAGCa--GCGG- -5'
19976 3' -59.6 NC_004687.1 + 128513 0.66 0.79156
Target:  5'- gGAAaGGCgUUgGGCUugagGUCCUCGUCGUa -3'
miRNA:   3'- -CUUaCCGgGA-CCGG----CAGGAGCAGCGg -5'
19976 3' -59.6 NC_004687.1 + 27486 0.66 0.79156
Target:  5'- ---aGGgUCUGGCCGUCgaCaagCGCCg -3'
miRNA:   3'- cuuaCCgGGACCGGCAGgaGca-GCGG- -5'
19976 3' -59.6 NC_004687.1 + 12151 0.66 0.79156
Target:  5'- cGAGgacuGCCCgccGCCGUCgUCGUagaGCCa -3'
miRNA:   3'- -CUUac--CGGGac-CGGCAGgAGCAg--CGG- -5'
19976 3' -59.6 NC_004687.1 + 107705 0.66 0.79156
Target:  5'- -cGUGGCCCgcUGGCCGgUCga-GUaCGCCc -3'
miRNA:   3'- cuUACCGGG--ACCGGC-AGgagCA-GCGG- -5'
19976 3' -59.6 NC_004687.1 + 97444 0.66 0.79156
Target:  5'- --cUGGUCCUGGUCucagGUCCggCGugacgcugaaaUCGCCa -3'
miRNA:   3'- cuuACCGGGACCGG----CAGGa-GC-----------AGCGG- -5'
19976 3' -59.6 NC_004687.1 + 90392 0.66 0.79156
Target:  5'- cGAGcUGuaCCUGGCCGaCCUCuacaccgagaUCGCCa -3'
miRNA:   3'- -CUU-ACcgGGACCGGCaGGAGc---------AGCGG- -5'
19976 3' -59.6 NC_004687.1 + 130493 0.66 0.79156
Target:  5'- -uAUGGCCCggauugGGCCGauagCCguaggcggUGUCGaCCg -3'
miRNA:   3'- cuUACCGGGa-----CCGGCa---GGa-------GCAGC-GG- -5'
19976 3' -59.6 NC_004687.1 + 113856 0.66 0.782658
Target:  5'- ---gGGUCCUGGCCGgUgaCGUCcuGCCc -3'
miRNA:   3'- cuuaCCGGGACCGGCaGgaGCAG--CGG- -5'
19976 3' -59.6 NC_004687.1 + 97289 0.66 0.782658
Target:  5'- --cUGGUaCUGGCCGUggucagggucgcCCUCGggguucuugCGCCa -3'
miRNA:   3'- cuuACCGgGACCGGCA------------GGAGCa--------GCGG- -5'
19976 3' -59.6 NC_004687.1 + 22766 0.66 0.782658
Target:  5'- -cGUGGUCgagCUGGCCGcgaCUgacgaCGUCGCCa -3'
miRNA:   3'- cuUACCGG---GACCGGCag-GA-----GCAGCGG- -5'
19976 3' -59.6 NC_004687.1 + 116499 0.66 0.782658
Target:  5'- ---cGGCCCgGGCCGUggCUC--CGCCg -3'
miRNA:   3'- cuuaCCGGGaCCGGCAg-GAGcaGCGG- -5'
19976 3' -59.6 NC_004687.1 + 146239 0.66 0.782658
Target:  5'- -cAUGGUgCUGGCCGgauacagCCagGgCGCCa -3'
miRNA:   3'- cuUACCGgGACCGGCa------GGagCaGCGG- -5'
19976 3' -59.6 NC_004687.1 + 84935 0.66 0.782658
Target:  5'- ---cGGUCCUcaaGGCCGacgcggacaaCCUCGUCGaCCc -3'
miRNA:   3'- cuuaCCGGGA---CCGGCa---------GGAGCAGC-GG- -5'
19976 3' -59.6 NC_004687.1 + 141638 0.66 0.782658
Target:  5'- -cAUGGCCCgucgGGUCGaUCCUgacacCGCCa -3'
miRNA:   3'- cuUACCGGGa---CCGGC-AGGAgca--GCGG- -5'
19976 3' -59.6 NC_004687.1 + 120938 0.66 0.782658
Target:  5'- ---cGGCCCcGGUgggGUCCUCuGcCGCCu -3'
miRNA:   3'- cuuaCCGGGaCCGg--CAGGAG-CaGCGG- -5'
19976 3' -59.6 NC_004687.1 + 72600 0.66 0.781761
Target:  5'- ---cGGCCUUGGagaCGUUCUUGUUcugguagGCCa -3'
miRNA:   3'- cuuaCCGGGACCg--GCAGGAGCAG-------CGG- -5'
19976 3' -59.6 NC_004687.1 + 148904 0.66 0.781761
Target:  5'- --cUGGCCCcacuguuucGGCCacagcuuGUaCUCGUCGCCu -3'
miRNA:   3'- cuuACCGGGa--------CCGG-------CAgGAGCAGCGG- -5'
19976 3' -59.6 NC_004687.1 + 147709 0.66 0.781761
Target:  5'- ---cGGCCCUcgcGGCgGUCCUUGcacuggaugcccaUgGCCg -3'
miRNA:   3'- cuuaCCGGGA---CCGgCAGGAGC-------------AgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.