miRNA display CGI


Results 1 - 20 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19976 5' -54.4 NC_004687.1 + 83969 0.65 0.964049
Target:  5'- cCCGGgGAUCAUGguccggcUCGGCCucguGGGCguaGCu -3'
miRNA:   3'- -GGCCgUUAGUGU-------AGUUGGu---CCCGg--CG- -5'
19976 5' -54.4 NC_004687.1 + 134030 0.65 0.964049
Target:  5'- aUCGGCGuaaccaCGCA-CAACCGGGucggcauGCUGCa -3'
miRNA:   3'- -GGCCGUua----GUGUaGUUGGUCC-------CGGCG- -5'
19976 5' -54.4 NC_004687.1 + 144716 0.65 0.964049
Target:  5'- aUCGGC-AUCGaagCAGCCaaugacgGGGGCgGCu -3'
miRNA:   3'- -GGCCGuUAGUguaGUUGG-------UCCCGgCG- -5'
19976 5' -54.4 NC_004687.1 + 130152 0.65 0.963715
Target:  5'- uCC-GCAGUCGCAgccacgcaucccCGAUCAGGuCCGCa -3'
miRNA:   3'- -GGcCGUUAGUGUa-----------GUUGGUCCcGGCG- -5'
19976 5' -54.4 NC_004687.1 + 100878 0.65 0.963715
Target:  5'- aCGGC-GUCugggcgaauagcgACGUCGgccucucGCCAGGGCaagaGCa -3'
miRNA:   3'- gGCCGuUAG-------------UGUAGU-------UGGUCCCGg---CG- -5'
19976 5' -54.4 NC_004687.1 + 108514 0.66 0.961311
Target:  5'- gCGGCAGUCcgggauGCguucuuguucuuccaGUCGAagaacuccuuguauCCGGGGCUGCu -3'
miRNA:   3'- gGCCGUUAG------UG---------------UAGUU--------------GGUCCCGGCG- -5'
19976 5' -54.4 NC_004687.1 + 50317 0.66 0.960959
Target:  5'- gCGGUAGU-AC-UCG--CGGGGCCGCa -3'
miRNA:   3'- gGCCGUUAgUGuAGUugGUCCCGGCG- -5'
19976 5' -54.4 NC_004687.1 + 86692 0.66 0.960959
Target:  5'- cCUGGCAAUCGCcu--ACUcGGcGCCGUc -3'
miRNA:   3'- -GGCCGUUAGUGuaguUGGuCC-CGGCG- -5'
19976 5' -54.4 NC_004687.1 + 115207 0.66 0.960959
Target:  5'- gCGGguAUCGgGUa---CAGGGCCGa -3'
miRNA:   3'- gGCCguUAGUgUAguugGUCCCGGCg -5'
19976 5' -54.4 NC_004687.1 + 77157 0.66 0.960959
Target:  5'- cCCGaGCAGUCAUAgcuGGCCGGaccGGUgGCa -3'
miRNA:   3'- -GGC-CGUUAGUGUag-UUGGUC---CCGgCG- -5'
19976 5' -54.4 NC_004687.1 + 101026 0.66 0.960959
Target:  5'- aCGGCccgccaCugGUUGAUCAGGGCC-Cg -3'
miRNA:   3'- gGCCGuua---GugUAGUUGGUCCCGGcG- -5'
19976 5' -54.4 NC_004687.1 + 3766 0.66 0.960959
Target:  5'- gCUGGCcg-CugGUC-AUCAuGGCCGCg -3'
miRNA:   3'- -GGCCGuuaGugUAGuUGGUcCCGGCG- -5'
19976 5' -54.4 NC_004687.1 + 6390 0.66 0.960959
Target:  5'- gCGGUGAgcccgaggUGCAUCGccACCuGGGCgGCa -3'
miRNA:   3'- gGCCGUUa-------GUGUAGU--UGGuCCCGgCG- -5'
19976 5' -54.4 NC_004687.1 + 20397 0.66 0.960959
Target:  5'- gCGGCAccuggCACAUCuACCuGGacuaCCGCa -3'
miRNA:   3'- gGCCGUua---GUGUAGuUGGuCCc---GGCG- -5'
19976 5' -54.4 NC_004687.1 + 95559 0.66 0.960959
Target:  5'- -aGGU-AUCgACGUCGGCCuugcGGGuuGCg -3'
miRNA:   3'- ggCCGuUAG-UGUAGUUGGu---CCCggCG- -5'
19976 5' -54.4 NC_004687.1 + 18158 0.66 0.960959
Target:  5'- aCCGGUgccgguGUgGGCCGGGGCuCGCu -3'
miRNA:   3'- -GGCCGuuagugUAgUUGGUCCCG-GCG- -5'
19976 5' -54.4 NC_004687.1 + 95122 0.66 0.960959
Target:  5'- cCCGGCGGU---GUC--CCAGuuGGCCGCg -3'
miRNA:   3'- -GGCCGUUAgugUAGuuGGUC--CCGGCG- -5'
19976 5' -54.4 NC_004687.1 + 63810 0.66 0.960959
Target:  5'- aCCGGCGAccgcaacCACGUCGagcACCAccgcgacauGGGCgaCGCg -3'
miRNA:   3'- -GGCCGUUa------GUGUAGU---UGGU---------CCCG--GCG- -5'
19976 5' -54.4 NC_004687.1 + 16759 0.66 0.960959
Target:  5'- uCCGGCc-UCGCAUCGucacagcgccCCGGGGCg-- -3'
miRNA:   3'- -GGCCGuuAGUGUAGUu---------GGUCCCGgcg -5'
19976 5' -54.4 NC_004687.1 + 102194 0.66 0.960959
Target:  5'- aUCGGCca-CGC-UCAGCCggAGGGCCu- -3'
miRNA:   3'- -GGCCGuuaGUGuAGUUGG--UCCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.