miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19988 3' -57.8 NC_004687.1 + 15277 0.66 0.872045
Target:  5'- -cUUGCgCGCGGCCacguuggggucgagcUGCAGACCGCc- -3'
miRNA:   3'- ccAGUGgGCGUUGG---------------ACGUCUGGCGcu -5'
19988 3' -57.8 NC_004687.1 + 26205 0.66 0.869156
Target:  5'- aGGUCuacaaCCGUAACggcgugGCAGACCcgGCGAu -3'
miRNA:   3'- -CCAGug---GGCGUUGga----CGUCUGG--CGCU- -5'
19988 3' -57.8 NC_004687.1 + 41406 0.66 0.869156
Target:  5'- --gCACCUGCAucgugACCUGCA-ACgCGCGGu -3'
miRNA:   3'- ccaGUGGGCGU-----UGGACGUcUG-GCGCU- -5'
19988 3' -57.8 NC_004687.1 + 59686 0.66 0.869156
Target:  5'- aGGUCGCCCGCuACC-GCuGAacaccCUGcCGAa -3'
miRNA:   3'- -CCAGUGGGCGuUGGaCGuCU-----GGC-GCU- -5'
19988 3' -57.8 NC_004687.1 + 9436 0.66 0.869156
Target:  5'- cGGUCACCgaCGCcACCgUGCuGcCCgGCGAa -3'
miRNA:   3'- -CCAGUGG--GCGuUGG-ACGuCuGG-CGCU- -5'
19988 3' -57.8 NC_004687.1 + 5314 0.66 0.869156
Target:  5'- cGGgcagCAUgaGCAACCUGCuGGCCGaGGc -3'
miRNA:   3'- -CCa---GUGggCGUUGGACGuCUGGCgCU- -5'
19988 3' -57.8 NC_004687.1 + 50437 0.66 0.869156
Target:  5'- aGGUU-CuuGaCGGCCUGCgcguAGGCCGCGc -3'
miRNA:   3'- -CCAGuGggC-GUUGGACG----UCUGGCGCu -5'
19988 3' -57.8 NC_004687.1 + 61454 0.66 0.869156
Target:  5'- -uUCGCCCa-GGCgCUGUAGGCgGCGAg -3'
miRNA:   3'- ccAGUGGGcgUUG-GACGUCUGgCGCU- -5'
19988 3' -57.8 NC_004687.1 + 71292 0.66 0.869156
Target:  5'- cGGUUggccuACCUGCAGacCCUGCAGGacaccCCGCc- -3'
miRNA:   3'- -CCAG-----UGGGCGUU--GGACGUCU-----GGCGcu -5'
19988 3' -57.8 NC_004687.1 + 134071 0.66 0.869156
Target:  5'- uGG-CGCCgaccgCGCAGCCaGCGGugCGCc- -3'
miRNA:   3'- -CCaGUGG-----GCGUUGGaCGUCugGCGcu -5'
19988 3' -57.8 NC_004687.1 + 54970 0.66 0.869156
Target:  5'- aGcCGCCCaGCugcagugguggGGCCUGauucaGGGCCGCGAc -3'
miRNA:   3'- cCaGUGGG-CG-----------UUGGACg----UCUGGCGCU- -5'
19988 3' -57.8 NC_004687.1 + 152529 0.66 0.869156
Target:  5'- cGGUCAUCaCGUuguaguagAGCCagaucuugUGCGGACCuGCGGg -3'
miRNA:   3'- -CCAGUGG-GCG--------UUGG--------ACGUCUGG-CGCU- -5'
19988 3' -57.8 NC_004687.1 + 54083 0.66 0.869156
Target:  5'- cGUCACCauggGCGacaucgaggGCCUGCAGGaaGCGc -3'
miRNA:   3'- cCAGUGGg---CGU---------UGGACGUCUggCGCu -5'
19988 3' -57.8 NC_004687.1 + 21691 0.66 0.869156
Target:  5'- --cCGCCCGuCGAgC-GCAccGACCGCGAg -3'
miRNA:   3'- ccaGUGGGC-GUUgGaCGU--CUGGCGCU- -5'
19988 3' -57.8 NC_004687.1 + 28714 0.66 0.869156
Target:  5'- cGGUgACCCGgcCAAguUCUGCcuGGCCGCGc -3'
miRNA:   3'- -CCAgUGGGC--GUU--GGACGu-CUGGCGCu -5'
19988 3' -57.8 NC_004687.1 + 114378 0.66 0.869156
Target:  5'- --gCGCCCcCAGCCUGCAcGCCGagGAc -3'
miRNA:   3'- ccaGUGGGcGUUGGACGUcUGGCg-CU- -5'
19988 3' -57.8 NC_004687.1 + 70525 0.66 0.861791
Target:  5'- cGGcCACCCGCAucGCCaaUGCgcaguccaucaaGGACCaGCGc -3'
miRNA:   3'- -CCaGUGGGCGU--UGG--ACG------------UCUGG-CGCu -5'
19988 3' -57.8 NC_004687.1 + 95409 0.66 0.861791
Target:  5'- aGGUCACCCGCugaCUGUucaucgacaccGGcGCCGuCGGc -3'
miRNA:   3'- -CCAGUGGGCGuugGACG-----------UC-UGGC-GCU- -5'
19988 3' -57.8 NC_004687.1 + 16467 0.66 0.861791
Target:  5'- gGGUCGCCCggGUGACCguccccCAGACcCGCa- -3'
miRNA:   3'- -CCAGUGGG--CGUUGGac----GUCUG-GCGcu -5'
19988 3' -57.8 NC_004687.1 + 17013 0.66 0.861791
Target:  5'- cGGUUAgCCaGCAGCgCgGuCAGACCGuCGAu -3'
miRNA:   3'- -CCAGUgGG-CGUUG-GaC-GUCUGGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.