Results 1 - 20 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2000 | 3' | -60.2 | NC_001347.2 | + | 222759 | 1.1 | 0.001554 |
Target: 5'- cGGCCAUUGCCGCCGCCGCCCAUACCAu -3' miRNA: 3'- -CCGGUAACGGCGGCGGCGGGUAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 17123 | 0.86 | 0.072928 |
Target: 5'- cGGUCGUccGCCgucgGCCGCCGCCCAUGCCAc -3' miRNA: 3'- -CCGGUAa-CGG----CGGCGGCGGGUAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 166137 | 0.8 | 0.157872 |
Target: 5'- cGGCC---GCCGCCGCaaCGCCCGUGCCc -3' miRNA: 3'- -CCGGuaaCGGCGGCG--GCGGGUAUGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 156653 | 0.8 | 0.173854 |
Target: 5'- gGGCCucgGCCGCCGCCGCCac--CCAu -3' miRNA: 3'- -CCGGuaaCGGCGGCGGCGGguauGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 131731 | 0.79 | 0.195849 |
Target: 5'- cGGCCGUcGCCGCCGCCGCgguUGCUAc -3' miRNA: 3'- -CCGGUAaCGGCGGCGGCGgguAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 164690 | 0.79 | 0.205308 |
Target: 5'- uGGCCGUUGCCGCguuagCGCCGCUUucgGUACCc -3' miRNA: 3'- -CCGGUAACGGCG-----GCGGCGGG---UAUGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 62779 | 0.78 | 0.230695 |
Target: 5'- cGCCGUUGCgGCCGCCGCUCAcaguCUAu -3' miRNA: 3'- cCGGUAACGgCGGCGGCGGGUau--GGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 67655 | 0.77 | 0.270628 |
Target: 5'- cGGCCGcUGCCGCCGCCaccaCCAccGCCAg -3' miRNA: 3'- -CCGGUaACGGCGGCGGcg--GGUa-UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 78414 | 0.76 | 0.29585 |
Target: 5'- gGGCUGcUGCCGCCGCCaCCCGgcCCGg -3' miRNA: 3'- -CCGGUaACGGCGGCGGcGGGUauGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 67710 | 0.76 | 0.302434 |
Target: 5'- cGUUcUUGCCGCCGCCGCCaugGCCu -3' miRNA: 3'- cCGGuAACGGCGGCGGCGGguaUGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 196140 | 0.75 | 0.329896 |
Target: 5'- cGGCCGcUGCCuGCCgGCgGCCCuGUGCCGc -3' miRNA: 3'- -CCGGUaACGG-CGG-CGgCGGG-UAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 65889 | 0.75 | 0.329896 |
Target: 5'- gGGCCGa--CCGCCGCCGCCCu--CCc -3' miRNA: 3'- -CCGGUaacGGCGGCGGCGGGuauGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 114413 | 0.75 | 0.337042 |
Target: 5'- cGGCCGUguucgaUGaaaCGCgCGCCGCCCGUcucaGCCAg -3' miRNA: 3'- -CCGGUA------ACg--GCG-GCGGCGGGUA----UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 63111 | 0.74 | 0.359153 |
Target: 5'- uGGCCGccgcgGCCGCCGCUguggccggaguGCCCGUcGCCGc -3' miRNA: 3'- -CCGGUaa---CGGCGGCGG-----------CGGGUA-UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 105550 | 0.74 | 0.374447 |
Target: 5'- cGCUAUgcgUGCUGCCGCCGCUCuu-CCAc -3' miRNA: 3'- cCGGUA---ACGGCGGCGGCGGGuauGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 89698 | 0.74 | 0.374447 |
Target: 5'- cGCCGgccCCGCCGCCGCCaccacUACCAc -3' miRNA: 3'- cCGGUaacGGCGGCGGCGGgu---AUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 81634 | 0.74 | 0.390176 |
Target: 5'- cGCaCGgcGCCGCCGCCGgCCUcgGUACCGa -3' miRNA: 3'- cCG-GUaaCGGCGGCGGC-GGG--UAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 209165 | 0.74 | 0.398201 |
Target: 5'- cGGCgGcaGCCGaCCaCCGCCCAUACCu -3' miRNA: 3'- -CCGgUaaCGGC-GGcGGCGGGUAUGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 38244 | 0.73 | 0.414565 |
Target: 5'- cGCCGcugcUGCUGCCGCgucCGCCCcgACCAc -3' miRNA: 3'- cCGGUa---ACGGCGGCG---GCGGGuaUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 41406 | 0.73 | 0.439868 |
Target: 5'- aGGCCAcgGCCGCCGUguacaguuagaaCGUCCAU-CCGc -3' miRNA: 3'- -CCGGUaaCGGCGGCG------------GCGGGUAuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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