Results 21 - 40 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2000 | 3' | -60.2 | NC_001347.2 | + | 76974 | 0.66 | 0.794519 |
Target: 5'- aGUC-UUGCCGgCGCC-CgCCGUGCCGg -3' miRNA: 3'- cCGGuAACGGCgGCGGcG-GGUAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 178889 | 0.67 | 0.78586 |
Target: 5'- -cUCGUcGCCGCCGCUGCC---GCCGg -3' miRNA: 3'- ccGGUAaCGGCGGCGGCGGguaUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 69611 | 0.67 | 0.776191 |
Target: 5'- cGCCGcagcaUGCCGucccaguCCGCCGCCCAacUGCg- -3' miRNA: 3'- cCGGUa----ACGGC-------GGCGGCGGGU--AUGgu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 195440 | 0.67 | 0.768175 |
Target: 5'- -cCCGUggaucaGCCGCCGCC-UCCAcUGCCAa -3' miRNA: 3'- ccGGUAa-----CGGCGGCGGcGGGU-AUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 17331 | 0.67 | 0.768175 |
Target: 5'- cGCgGUUGCCGCgcguaugGCCGCCg--GCCAc -3' miRNA: 3'- cCGgUAACGGCGg------CGGCGGguaUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 229932 | 0.67 | 0.768175 |
Target: 5'- cGCUuuuAUUcGCCGUCGCCGUCCuccgcACCAc -3' miRNA: 3'- cCGG---UAA-CGGCGGCGGCGGGua---UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 168741 | 0.67 | 0.768175 |
Target: 5'- uGGCCcgUGcCCGCaGCUGCUC-UAUCAa -3' miRNA: 3'- -CCGGuaAC-GGCGgCGGCGGGuAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 453 | 0.67 | 0.768175 |
Target: 5'- cGCUuuuAUUcGCCGUCGCCGUCCuccgcACCAc -3' miRNA: 3'- cCGG---UAA-CGGCGGCGGCGGGua---UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 105611 | 0.67 | 0.768175 |
Target: 5'- gGGCCAgugggaGCUGgUGCUGCCCuggaucguacccAUGCCAc -3' miRNA: 3'- -CCGGUaa----CGGCgGCGGCGGG------------UAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 68071 | 0.67 | 0.759165 |
Target: 5'- -aCCAgcGCCGCCGCC-UCCAccACCAc -3' miRNA: 3'- ccGGUaaCGGCGGCGGcGGGUa-UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 21624 | 0.67 | 0.759165 |
Target: 5'- uGCCA--GCCGUCGCCGCag--GCCu -3' miRNA: 3'- cCGGUaaCGGCGGCGGCGgguaUGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 181790 | 0.67 | 0.759165 |
Target: 5'- cGGCaCAUUauucCCGgCGCCGCCaacggCAUGCCGc -3' miRNA: 3'- -CCG-GUAAc---GGCgGCGGCGG-----GUAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 85981 | 0.67 | 0.759165 |
Target: 5'- uGCgA--GCCGCCGCCaCCCGaACCGu -3' miRNA: 3'- cCGgUaaCGGCGGCGGcGGGUaUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 200940 | 0.67 | 0.759165 |
Target: 5'- uGGCCcgUcGaccuuauccccaUCGUCGUCGCCUAUACCGg -3' miRNA: 3'- -CCGGuaA-C------------GGCGGCGGCGGGUAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 68174 | 0.67 | 0.740848 |
Target: 5'- gGGCCGUcgcgagucCCGCCGCUGCCac--CCAg -3' miRNA: 3'- -CCGGUAac------GGCGGCGGCGGguauGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 126319 | 0.67 | 0.740848 |
Target: 5'- gGGCCAggUGCUGCUGaCCaugGCCUAcUACCu -3' miRNA: 3'- -CCGGUa-ACGGCGGC-GG---CGGGU-AUGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 56439 | 0.68 | 0.731557 |
Target: 5'- -cUCGUUGCUGCCGCgCGCgCC--ACCAg -3' miRNA: 3'- ccGGUAACGGCGGCG-GCG-GGuaUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 128325 | 0.68 | 0.730623 |
Target: 5'- cGGCUcgucgucacccgcGUgugGCCGCCGCUGCUCGagcACCu -3' miRNA: 3'- -CCGG-------------UAa--CGGCGGCGGCGGGUa--UGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 92258 | 0.68 | 0.727818 |
Target: 5'- aGGCCGUgGCCGCCGCCaugaggcGCgUCAUggaagggauaucgcACCGa -3' miRNA: 3'- -CCGGUAaCGGCGGCGG-------CG-GGUA--------------UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 185342 | 0.68 | 0.722188 |
Target: 5'- aGGuCCGUgcgagcagGCCGCCGCCGUggggGCCGc -3' miRNA: 3'- -CC-GGUAa-------CGGCGGCGGCGgguaUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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