Results 1 - 20 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2000 | 3' | -60.2 | NC_001347.2 | + | 453 | 0.67 | 0.768175 |
Target: 5'- cGCUuuuAUUcGCCGUCGCCGUCCuccgcACCAc -3' miRNA: 3'- cCGG---UAA-CGGCGGCGGCGGGua---UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 734 | 0.72 | 0.492971 |
Target: 5'- cGCCG-UGCaCGUCGCUGCCUAUaaaaGCCAg -3' miRNA: 3'- cCGGUaACG-GCGGCGGCGGGUA----UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 1271 | 0.7 | 0.596815 |
Target: 5'- gGGCac--GCUGCUGCCGCUCGgacgGCCGu -3' miRNA: 3'- -CCGguaaCGGCGGCGGCGGGUa---UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 2406 | 0.72 | 0.492971 |
Target: 5'- aGGCCGcgcgGCgGCUGCUGCCCGaGCUg -3' miRNA: 3'- -CCGGUaa--CGgCGGCGGCGGGUaUGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 5877 | 0.66 | 0.803046 |
Target: 5'- cGCCAgucGCCGCaGUCGCaCCAcagGCCGu -3' miRNA: 3'- cCGGUaa-CGGCGgCGGCG-GGUa--UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 11778 | 0.69 | 0.655088 |
Target: 5'- uGCCAagUGCCGCuccaCGCCGCggcaCCAUgcGCCAg -3' miRNA: 3'- cCGGUa-ACGGCG----GCGGCG----GGUA--UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 12332 | 0.66 | 0.833325 |
Target: 5'- aGGCCAUcuacggcgagcaaaUGCgcaCGCCGCUGCUa--ACCAc -3' miRNA: 3'- -CCGGUA--------------ACG---GCGGCGGCGGguaUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 13531 | 0.71 | 0.520607 |
Target: 5'- cGGCCcggGCCGCCgugcuggaggGCCGCCCcacGCCc -3' miRNA: 3'- -CCGGuaaCGGCGG----------CGGCGGGua-UGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 16517 | 0.66 | 0.794519 |
Target: 5'- uGGCCcuucgagGUagCGCCaGCCGCCCGcuugGCCGa -3' miRNA: 3'- -CCGGuaa----CG--GCGG-CGGCGGGUa---UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 17123 | 0.86 | 0.072928 |
Target: 5'- cGGUCGUccGCCgucgGCCGCCGCCCAUGCCAc -3' miRNA: 3'- -CCGGUAa-CGG----CGGCGGCGGGUAUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 17331 | 0.67 | 0.768175 |
Target: 5'- cGCgGUUGCCGCgcguaugGCCGCCg--GCCAc -3' miRNA: 3'- cCGgUAACGGCGg------CGGCGGguaUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 18460 | 0.66 | 0.811433 |
Target: 5'- gGGCC--UGCgCGCCuGCCGgCCuuuugACCAc -3' miRNA: 3'- -CCGGuaACG-GCGG-CGGCgGGua---UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 20442 | 0.66 | 0.835686 |
Target: 5'- cGGCUuugUGCCGagaCCGUCGCCacCAUGCa- -3' miRNA: 3'- -CCGGua-ACGGC---GGCGGCGG--GUAUGgu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 21624 | 0.67 | 0.759165 |
Target: 5'- uGCCA--GCCGUCGCCGCag--GCCu -3' miRNA: 3'- cCGGUaaCGGCGGCGGCGgguaUGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 24602 | 0.69 | 0.645377 |
Target: 5'- cGGCacccgcGCUGCCGUCGUCCGUuCCGa -3' miRNA: 3'- -CCGguaa--CGGCGGCGGCGGGUAuGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 27997 | 0.69 | 0.664783 |
Target: 5'- -aCCcgUGUCGCCGCCGUcaCCAccGCCGa -3' miRNA: 3'- ccGGuaACGGCGGCGGCG--GGUa-UGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 31116 | 0.7 | 0.606506 |
Target: 5'- -uCCAUUGCCgGCCGgCGUCCAggcUGCCc -3' miRNA: 3'- ccGGUAACGG-CGGCgGCGGGU---AUGGu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 38244 | 0.73 | 0.414565 |
Target: 5'- cGCCGcugcUGCUGCCGCgucCGCCCcgACCAc -3' miRNA: 3'- cCGGUa---ACGGCGGCG---GCGGGuaUGGU- -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 38399 | 0.66 | 0.82776 |
Target: 5'- cGGCCuccgucuccgUGCCGCuCGCCGCUgGcgGCg- -3' miRNA: 3'- -CCGGua--------ACGGCG-GCGGCGGgUa-UGgu -5' |
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2000 | 3' | -60.2 | NC_001347.2 | + | 38460 | 0.69 | 0.645377 |
Target: 5'- cGCCGgccCCGCCGCgcaGCCCA-GCCAc -3' miRNA: 3'- cCGGUaacGGCGGCGg--CGGGUaUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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