Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2000 | 5' | -51.3 | NC_001347.2 | + | 222796 | 1.15 | 0.005214 |
Target: 5'- gGCCGACAAAUCGCAGCUGUCUUCGCCg -3' miRNA: 3'- -CGGCUGUUUAGCGUCGACAGAAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 161880 | 0.78 | 0.664571 |
Target: 5'- cGCCGACAGGUacgGCAGUUGUugcguggCUUUGCCc -3' miRNA: 3'- -CGGCUGUUUAg--CGUCGACA-------GAAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 106014 | 0.77 | 0.696021 |
Target: 5'- -aCGACGAGaucgCGCGGCUGUCggCGCUu -3' miRNA: 3'- cgGCUGUUUa---GCGUCGACAGaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 228687 | 0.76 | 0.755189 |
Target: 5'- aGUCGGCGucaaAGUCGCuugcGCUGUCggcccagUCGCCa -3' miRNA: 3'- -CGGCUGU----UUAGCGu---CGACAGa------AGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 208041 | 0.75 | 0.810447 |
Target: 5'- aCCGACGucggAGUCGCGGCguucGUUggCGCCg -3' miRNA: 3'- cGGCUGU----UUAGCGUCGa---CAGaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 5687 | 0.73 | 0.901991 |
Target: 5'- cGCCGACGAcucGUCGuCGGau-UCUUUGCCg -3' miRNA: 3'- -CGGCUGUU---UAGC-GUCgacAGAAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 113377 | 0.73 | 0.908211 |
Target: 5'- uGCCcaACAGGcCGUAGCUGUCUgagcgaaagggaUCGCCc -3' miRNA: 3'- -CGGc-UGUUUaGCGUCGACAGA------------AGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 126019 | 0.72 | 0.92545 |
Target: 5'- -gCGGCGGGUgGC-GCccGUCUUCGCCg -3' miRNA: 3'- cgGCUGUUUAgCGuCGa-CAGAAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 163369 | 0.71 | 0.940538 |
Target: 5'- cGuuGAUGAGUCGCAGacgcGUCUguUCGUCg -3' miRNA: 3'- -CggCUGUUUAGCGUCga--CAGA--AGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 197624 | 0.71 | 0.945092 |
Target: 5'- cGCCGACucgcugcCGCAGCUG-CUggagCGCg -3' miRNA: 3'- -CGGCUGuuua---GCGUCGACaGAa---GCGg -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 65630 | 0.71 | 0.949411 |
Target: 5'- cCCGACGAGcaggcUCGCGuGUuuUGUCUgagCGCCg -3' miRNA: 3'- cGGCUGUUU-----AGCGU-CG--ACAGAa--GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 89026 | 0.71 | 0.953497 |
Target: 5'- -aCGuuacCGGAUUGCAGCUGUCgggCGCg -3' miRNA: 3'- cgGCu---GUUUAGCGUCGACAGaa-GCGg -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 225525 | 0.71 | 0.953497 |
Target: 5'- gGCgGGCGAAUCGgcCGGCUGg--UCGUCg -3' miRNA: 3'- -CGgCUGUUUAGC--GUCGACagaAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 97650 | 0.71 | 0.957356 |
Target: 5'- cCCGGCAcGUCGUAcagcucgucccuGCUGUCgUCGUCu -3' miRNA: 3'- cGGCUGUuUAGCGU------------CGACAGaAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 172542 | 0.71 | 0.957356 |
Target: 5'- cGCUGGCucggCGCGGCUGUauuauuagaCGCCg -3' miRNA: 3'- -CGGCUGuuuaGCGUCGACAgaa------GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 94810 | 0.7 | 0.967602 |
Target: 5'- cGCCGGCGugcGUCaugagGUAGCUGUacaCGCCg -3' miRNA: 3'- -CGGCUGUu--UAG-----CGUCGACAgaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 195614 | 0.7 | 0.967602 |
Target: 5'- cGCCGAUucguAAUCGacaggaGGCUGUgcgCGCCg -3' miRNA: 3'- -CGGCUGu---UUAGCg-----UCGACAgaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 24931 | 0.7 | 0.967602 |
Target: 5'- cGCCGGuCAcuuuUCGCAGCgGUCcuuUUCGUCc -3' miRNA: 3'- -CGGCU-GUuu--AGCGUCGaCAG---AAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 142616 | 0.7 | 0.967602 |
Target: 5'- uGCCGGCcAAaCGCAGCcgGUUguaacCGCCa -3' miRNA: 3'- -CGGCUGuUUaGCGUCGa-CAGaa---GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 88251 | 0.7 | 0.970591 |
Target: 5'- cGCCGGUGAAgagagCGCGGCguacgcugGUCacgUCGCCg -3' miRNA: 3'- -CGGCUGUUUa----GCGUCGa-------CAGa--AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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