Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2000 | 5' | -51.3 | NC_001347.2 | + | 192979 | 0.67 | 0.99652 |
Target: 5'- cCCGGCGuucAGUCGCGGCUGag--CGUg -3' miRNA: 3'- cGGCUGU---UUAGCGUCGACagaaGCGg -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 208459 | 0.67 | 0.995935 |
Target: 5'- uGCCGGCGgc-UGCAGUUGUUgucCGCa -3' miRNA: 3'- -CGGCUGUuuaGCGUCGACAGaa-GCGg -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 88341 | 0.67 | 0.995935 |
Target: 5'- aGCCGugGuaaccGUCGCcGCUGgCggCGCUg -3' miRNA: 3'- -CGGCugUu----UAGCGuCGACaGaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 85250 | 0.67 | 0.9952 |
Target: 5'- aGCCGGCcca--GCAGCucgggcgUGUUUUCGUCc -3' miRNA: 3'- -CGGCUGuuuagCGUCG-------ACAGAAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 208724 | 0.67 | 0.994523 |
Target: 5'- cGCCGugGucucGGUCGCcaGGCUguggGUCUcgUUGCCc -3' miRNA: 3'- -CGGCugU----UUAGCG--UCGA----CAGA--AGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 196887 | 0.67 | 0.994523 |
Target: 5'- cCCGACuac-CGCAGCgUGUCgcugCGCa -3' miRNA: 3'- cGGCUGuuuaGCGUCG-ACAGaa--GCGg -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 126934 | 0.67 | 0.993681 |
Target: 5'- uUCGGCAccuccaCGCAGCUGgcg-CGCCa -3' miRNA: 3'- cGGCUGUuua---GCGUCGACagaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 42898 | 0.67 | 0.993681 |
Target: 5'- cGgCGACGGAgaGgAGCUGUCcgcCGCCg -3' miRNA: 3'- -CgGCUGUUUagCgUCGACAGaa-GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 33416 | 0.67 | 0.993681 |
Target: 5'- uGCCGACccc-CGguGagcgGUCUUCGCg -3' miRNA: 3'- -CGGCUGuuuaGCguCga--CAGAAGCGg -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 189698 | 0.67 | 0.993681 |
Target: 5'- cCCGcCAcAUCGCcGCUGUCcaugcuUUCGUCa -3' miRNA: 3'- cGGCuGUuUAGCGuCGACAG------AAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 196509 | 0.67 | 0.993681 |
Target: 5'- cGCCGACuGGUCGCAgacGCUGaUCgaCGaCUa -3' miRNA: 3'- -CGGCUGuUUAGCGU---CGAC-AGaaGC-GG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 25379 | 0.68 | 0.993128 |
Target: 5'- cGCCGugGGuUgGCAGCUGgccggCUUgaccgcguuguugagCGCCu -3' miRNA: 3'- -CGGCugUUuAgCGUCGACa----GAA---------------GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 202998 | 0.68 | 0.992738 |
Target: 5'- uGCUGACGAAcgCGUcuGGCUGUg--UGCCg -3' miRNA: 3'- -CGGCUGUUUa-GCG--UCGACAgaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 198998 | 0.68 | 0.992738 |
Target: 5'- uGCCG-CGAugcCGCAGC--UCUUCGUCc -3' miRNA: 3'- -CGGCuGUUua-GCGUCGacAGAAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 75975 | 0.68 | 0.992738 |
Target: 5'- -gCGGCGAGUCGCccAGCggGUCg--GCCa -3' miRNA: 3'- cgGCUGUUUAGCG--UCGa-CAGaagCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 54266 | 0.68 | 0.991687 |
Target: 5'- -aCGACAAggCGCAGUaccUG-CUgggCGCCg -3' miRNA: 3'- cgGCUGUUuaGCGUCG---ACaGAa--GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 12633 | 0.68 | 0.991687 |
Target: 5'- gGUgGGCGAAUCGCuacccuccGGC-GUCUUucaCGCCg -3' miRNA: 3'- -CGgCUGUUUAGCG--------UCGaCAGAA---GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 25722 | 0.68 | 0.991687 |
Target: 5'- cGCCGuCAGAUCGUGGUcGUCcaUGCUu -3' miRNA: 3'- -CGGCuGUUUAGCGUCGaCAGaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 222411 | 0.68 | 0.991687 |
Target: 5'- gGCCGugGAgaggcGUCGCcGC-GUCUcguUCGUCg -3' miRNA: 3'- -CGGCugUU-----UAGCGuCGaCAGA---AGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 115029 | 0.68 | 0.990518 |
Target: 5'- uGCCGuCAccGUCGCGuccgacgcgacGgUGUUUUCGCCg -3' miRNA: 3'- -CGGCuGUu-UAGCGU-----------CgACAGAAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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