Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2000 | 5' | -51.3 | NC_001347.2 | + | 734 | 0.68 | 0.990144 |
Target: 5'- cGCCGuGCAcGUCGCugccuauaaaagccAGCUG-CgugUCGCCc -3' miRNA: 3'- -CGGC-UGUuUAGCG--------------UCGACaGa--AGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 1595 | 0.69 | 0.978369 |
Target: 5'- cGCgGGCGAGguggUGCGGCUGUac-CGCUg -3' miRNA: 3'- -CGgCUGUUUa---GCGUCGACAgaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 1678 | 0.66 | 0.998506 |
Target: 5'- uCCGACAGA-CGUuGCUGcg--CGCCg -3' miRNA: 3'- cGGCUGUUUaGCGuCGACagaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 4610 | 0.68 | 0.987798 |
Target: 5'- uGCCGACAGGUaagaUGCGGCUaGUauuaaggcCUgaaCGCCa -3' miRNA: 3'- -CGGCUGUUUA----GCGUCGA-CA--------GAa--GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 5687 | 0.73 | 0.901991 |
Target: 5'- cGCCGACGAcucGUCGuCGGau-UCUUUGCCg -3' miRNA: 3'- -CGGCUGUU---UAGC-GUCgacAGAAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 12633 | 0.68 | 0.991687 |
Target: 5'- gGUgGGCGAAUCGCuacccuccGGC-GUCUUucaCGCCg -3' miRNA: 3'- -CGgCUGUUUAGCG--------UCGaCAGAA---GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 16946 | 0.66 | 0.997874 |
Target: 5'- cGCUGGCucuGUCGaGGCgacGUUUUCGCg -3' miRNA: 3'- -CGGCUGuu-UAGCgUCGa--CAGAAGCGg -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 24931 | 0.7 | 0.967602 |
Target: 5'- cGCCGGuCAcuuuUCGCAGCgGUCcuuUUCGUCc -3' miRNA: 3'- -CGGCU-GUuu--AGCGUCGaCAG---AAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 25379 | 0.68 | 0.993128 |
Target: 5'- cGCCGugGGuUgGCAGCUGgccggCUUgaccgcguuguugagCGCCu -3' miRNA: 3'- -CGGCugUUuAgCGUCGACa----GAA---------------GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 25722 | 0.68 | 0.991687 |
Target: 5'- cGCCGuCAGAUCGUGGUcGUCcaUGCUu -3' miRNA: 3'- -CGGCuGUUUAGCGUCGaCAGaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 30742 | 0.66 | 0.998213 |
Target: 5'- -gCGACGAGUCGUcuGC-GUCcUCGUCg -3' miRNA: 3'- cgGCUGUUUAGCGu-CGaCAGaAGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 33416 | 0.67 | 0.993681 |
Target: 5'- uGCCGACccc-CGguGagcgGUCUUCGCg -3' miRNA: 3'- -CGGCUGuuuaGCguCga--CAGAAGCGg -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 38681 | 0.69 | 0.979721 |
Target: 5'- uGCCGGCccaccgccggCGCAGCUcccGUCcgagCGCCg -3' miRNA: 3'- -CGGCUGuuua------GCGUCGA---CAGaa--GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 38754 | 0.66 | 0.997034 |
Target: 5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3' miRNA: 3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 40669 | 0.66 | 0.997483 |
Target: 5'- gGCCGGgGAcggggGUUGCgcuggggccggGGCUGUUcgCGCCg -3' miRNA: 3'- -CGGCUgUU-----UAGCG-----------UCGACAGaaGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 42898 | 0.67 | 0.993681 |
Target: 5'- cGgCGACGGAgaGgAGCUGUCcgcCGCCg -3' miRNA: 3'- -CgGCUGUUUagCgUCGACAGaa-GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 54266 | 0.68 | 0.991687 |
Target: 5'- -aCGACAAggCGCAGUaccUG-CUgggCGCCg -3' miRNA: 3'- cgGCUGUUuaGCGUCG---ACaGAa--GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 54486 | 0.66 | 0.998478 |
Target: 5'- cGCCGACuaaauucauGUCGCGcgauaguGgUGUUUaUCGCCg -3' miRNA: 3'- -CGGCUGuu-------UAGCGU-------CgACAGA-AGCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 65630 | 0.71 | 0.949411 |
Target: 5'- cCCGACGAGcaggcUCGCGuGUuuUGUCUgagCGCCg -3' miRNA: 3'- cGGCUGUUU-----AGCGU-CG--ACAGAa--GCGG- -5' |
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2000 | 5' | -51.3 | NC_001347.2 | + | 66517 | 0.67 | 0.99652 |
Target: 5'- aGgCGGCGgcGAUCGCAGCc-UCcUCGCUg -3' miRNA: 3'- -CgGCUGU--UUAGCGUCGacAGaAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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