Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2001 | 3' | -44.9 | NC_001347.2 | + | 225457 | 1.12 | 0.031372 |
Target: 5'- cAUAUAAAAACGCAGGGGUUUAGCAGCu -3' miRNA: 3'- -UAUAUUUUUGCGUCCCCAAAUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 158733 | 0.79 | 0.922765 |
Target: 5'- -----cAGGCGCGcGGcGGUUUAGCAGCg -3' miRNA: 3'- uauauuUUUGCGU-CC-CCAAAUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 203843 | 0.76 | 0.974358 |
Target: 5'- -cGUGGAGGCaGCGGGGGU--GGUAGUa -3' miRNA: 3'- uaUAUUUUUG-CGUCCCCAaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 151190 | 0.76 | 0.976266 |
Target: 5'- -aGUGGGAACGCGGGaGGgggauucggaggagAGCAGCg -3' miRNA: 3'- uaUAUUUUUGCGUCC-CCaaa-----------UCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 44394 | 0.76 | 0.977051 |
Target: 5'- ---gGAGAACGCcGGGGc--AGCAGCg -3' miRNA: 3'- uauaUUUUUGCGuCCCCaaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 44049 | 0.76 | 0.97953 |
Target: 5'- -gGUGGugGCGCuGGGGGU--GGCGGCa -3' miRNA: 3'- uaUAUUuuUGCG-UCCCCAaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 186129 | 0.76 | 0.981804 |
Target: 5'- ---gAGAGACGUAGGGaGUUU-GUAGCg -3' miRNA: 3'- uauaUUUUUGCGUCCC-CAAAuCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 142581 | 0.74 | 0.994704 |
Target: 5'- ---cGGGAGCaGCGGGGGcggcgggGGCAGCg -3' miRNA: 3'- uauaUUUUUG-CGUCCCCaaa----UCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 39872 | 0.72 | 0.998946 |
Target: 5'- ---gAGGGGCGgGGGGGUguuuUUAGCGGg -3' miRNA: 3'- uauaUUUUUGCgUCCCCA----AAUCGUCg -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 140528 | 0.72 | 0.998924 |
Target: 5'- ------cGACGCcaaggacGGGGGUUUGGaCGGCa -3' miRNA: 3'- uauauuuUUGCG-------UCCCCAAAUC-GUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 117989 | 0.71 | 0.99965 |
Target: 5'- ---gAAGAACGCGgacgacacGGuGGUUgUAGCAGCg -3' miRNA: 3'- uauaUUUUUGCGU--------CC-CCAA-AUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 228745 | 0.71 | 0.99965 |
Target: 5'- -------cGCGCGGGGGacggGGUAGCc -3' miRNA: 3'- uauauuuuUGCGUCCCCaaa-UCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 37668 | 0.7 | 0.999786 |
Target: 5'- -----uGAGCGguGGGGgcaucguuGCAGCg -3' miRNA: 3'- uauauuUUUGCguCCCCaaau----CGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 156676 | 0.7 | 0.999834 |
Target: 5'- ------cAugGCGGcGGGUcgUGGCGGCu -3' miRNA: 3'- uauauuuUugCGUC-CCCAa-AUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 165059 | 0.69 | 0.999973 |
Target: 5'- ---cAGGAGgGCAacccgggucgacgauGGGGUcgGGCAGCg -3' miRNA: 3'- uauaUUUUUgCGU---------------CCCCAaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 209408 | 0.69 | 0.999945 |
Target: 5'- ------cGAUGCGGGGGUUcucggGGCGGa -3' miRNA: 3'- uauauuuUUGCGUCCCCAAa----UCGUCg -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 206 | 0.68 | 0.999978 |
Target: 5'- gGUGUG--GugGCGGGGuGUgucGGCGGUg -3' miRNA: 3'- -UAUAUuuUugCGUCCC-CAaa-UCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 39511 | 0.68 | 0.999989 |
Target: 5'- ----cAAGGgGCGGGGGgc--GCGGCg -3' miRNA: 3'- uauauUUUUgCGUCCCCaaauCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 132830 | 0.68 | 0.999989 |
Target: 5'- gGUGUuuuuACGCAGguGGGUgaGGCAGUu -3' miRNA: 3'- -UAUAuuuuUGCGUC--CCCAaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 7886 | 0.68 | 0.999989 |
Target: 5'- -gGUAGuGAC-CAGGuGGUcagUGGCGGCg -3' miRNA: 3'- uaUAUUuUUGcGUCC-CCAa--AUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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