Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2001 | 3' | -44.9 | NC_001347.2 | + | 229685 | 0.68 | 0.999978 |
Target: 5'- gGUGUG--GugGCGGGGuGUgucGGCGGUg -3' miRNA: 3'- -UAUAUuuUugCGUCCC-CAaa-UCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 229526 | 0.68 | 0.999989 |
Target: 5'- uGUGUcgGGGCGCGGcGGGU--GGguGUg -3' miRNA: 3'- -UAUAuuUUUGCGUC-CCCAaaUCguCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 229027 | 0.68 | 0.999978 |
Target: 5'- cGUGUGuuGGGCGUcuGGGUgaAGCGGCg -3' miRNA: 3'- -UAUAUu-UUUGCGucCCCAaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 228745 | 0.71 | 0.99965 |
Target: 5'- -------cGCGCGGGGGacggGGUAGCc -3' miRNA: 3'- uauauuuuUGCGUCCCCaaa-UCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 228368 | 0.66 | 1 |
Target: 5'- -gGUGGAuGugGC-GGGGUgcGGCGGUu -3' miRNA: 3'- uaUAUUU-UugCGuCCCCAaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 225457 | 1.12 | 0.031372 |
Target: 5'- cAUAUAAAAACGCAGGGGUUUAGCAGCu -3' miRNA: 3'- -UAUAUUUUUGCGUCCCCAAAUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 219048 | 0.67 | 0.999997 |
Target: 5'- uUGUAGAAACGguGGuugcuGGUgcaguuGCAGUa -3' miRNA: 3'- uAUAUUUUUGCguCC-----CCAaau---CGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 209408 | 0.69 | 0.999945 |
Target: 5'- ------cGAUGCGGGGGUUcucggGGCGGa -3' miRNA: 3'- uauauuuUUGCGUCCCCAAa----UCGUCg -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 203843 | 0.76 | 0.974358 |
Target: 5'- -cGUGGAGGCaGCGGGGGU--GGUAGUa -3' miRNA: 3'- uaUAUUUUUG-CGUCCCCAaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 186129 | 0.76 | 0.981804 |
Target: 5'- ---gAGAGACGUAGGGaGUUU-GUAGCg -3' miRNA: 3'- uauaUUUUUGCGUCCC-CAAAuCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 173661 | 0.67 | 0.999997 |
Target: 5'- ---gGAGGugGCGGcGGU--GGCGGCa -3' miRNA: 3'- uauaUUUUugCGUCcCCAaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 165059 | 0.69 | 0.999973 |
Target: 5'- ---cAGGAGgGCAacccgggucgacgauGGGGUcgGGCAGCg -3' miRNA: 3'- uauaUUUUUgCGU---------------CCCCAaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 158733 | 0.79 | 0.922765 |
Target: 5'- -----cAGGCGCGcGGcGGUUUAGCAGCg -3' miRNA: 3'- uauauuUUUGCGU-CC-CCAAAUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 158366 | 0.67 | 0.999997 |
Target: 5'- ---------aGCGGGuGGUgcGGCAGCg -3' miRNA: 3'- uauauuuuugCGUCC-CCAaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 156676 | 0.7 | 0.999834 |
Target: 5'- ------cAugGCGGcGGGUcgUGGCGGCu -3' miRNA: 3'- uauauuuUugCGUC-CCCAa-AUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 155425 | 0.67 | 0.999997 |
Target: 5'- --uUGAGGACGCGGaaaaaagaauguccuGGGcuaAGCAGCg -3' miRNA: 3'- uauAUUUUUGCGUC---------------CCCaaaUCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 151190 | 0.76 | 0.976266 |
Target: 5'- -aGUGGGAACGCGGGaGGgggauucggaggagAGCAGCg -3' miRNA: 3'- uaUAUUUUUGCGUCC-CCaaa-----------UCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 144612 | 0.67 | 0.999999 |
Target: 5'- ---gAAAGugGUAGGGGg--AGgGGUg -3' miRNA: 3'- uauaUUUUugCGUCCCCaaaUCgUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 142581 | 0.74 | 0.994704 |
Target: 5'- ---cGGGAGCaGCGGGGGcggcgggGGCAGCg -3' miRNA: 3'- uauaUUUUUG-CGUCCCCaaa----UCGUCG- -5' |
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2001 | 3' | -44.9 | NC_001347.2 | + | 142449 | 0.66 | 1 |
Target: 5'- ------cGGCGuCGGGGGU--GGCGGUc -3' miRNA: 3'- uauauuuUUGC-GUCCCCAaaUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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