miRNA display CGI


Results 1 - 20 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20014 3' -52.8 NC_004687.1 + 149905 0.66 0.983735
Target:  5'- gCCUUG-UCGAUGcgcAGCGCGgccUCGGCAGCc -3'
miRNA:   3'- -GGGACuAGCUGC---UCGCGU---GGUUGUUG- -5'
20014 3' -52.8 NC_004687.1 + 150955 0.66 0.983735
Target:  5'- gCCUGAUCaGCaGAGagauGCGCCGAgGAUg -3'
miRNA:   3'- gGGACUAGcUG-CUCg---CGUGGUUgUUG- -5'
20014 3' -52.8 NC_004687.1 + 39906 0.66 0.983735
Target:  5'- uCCCaGAUCGcGCGGGCuccugccacugGCGCuCAugGGCa -3'
miRNA:   3'- -GGGaCUAGC-UGCUCG-----------CGUG-GUugUUG- -5'
20014 3' -52.8 NC_004687.1 + 37569 0.66 0.983735
Target:  5'- gCCUGcgCaaGGCGGGCGUgaacauGCCgAACAGCc -3'
miRNA:   3'- gGGACuaG--CUGCUCGCG------UGG-UUGUUG- -5'
20014 3' -52.8 NC_004687.1 + 131214 0.66 0.983735
Target:  5'- aCCUUGAucgugUCGGCGGGaCGCuugACCu-CGACa -3'
miRNA:   3'- -GGGACU-----AGCUGCUC-GCG---UGGuuGUUG- -5'
20014 3' -52.8 NC_004687.1 + 152719 0.66 0.983735
Target:  5'- gCCUGAUCGAgGAcccgcagauucucauCGCggccaccggugauGCCAACAGCg -3'
miRNA:   3'- gGGACUAGCUgCUc--------------GCG-------------UGGUUGUUG- -5'
20014 3' -52.8 NC_004687.1 + 109799 0.66 0.983735
Target:  5'- gUCCUGAgCGACGA-CGacUACCAGCGGg -3'
miRNA:   3'- -GGGACUaGCUGCUcGC--GUGGUUGUUg -5'
20014 3' -52.8 NC_004687.1 + 2437 0.66 0.983545
Target:  5'- gCCgaGAUCGAacaGuuGCGCGCCGaagucgaACGGCu -3'
miRNA:   3'- -GGgaCUAGCUg--Cu-CGCGUGGU-------UGUUG- -5'
20014 3' -52.8 NC_004687.1 + 150843 0.66 0.983545
Target:  5'- gCCUGuGUC-ACGGccuccuugagcuuGCGCugCAGCGACg -3'
miRNA:   3'- gGGAC-UAGcUGCU-------------CGCGugGUUGUUG- -5'
20014 3' -52.8 NC_004687.1 + 132461 0.66 0.98316
Target:  5'- gCCCUGcgggGUCGagacuuccggggcaGCGGGCGCcUgGACGGCg -3'
miRNA:   3'- -GGGAC----UAGC--------------UGCUCGCGuGgUUGUUG- -5'
20014 3' -52.8 NC_004687.1 + 46778 0.66 0.98257
Target:  5'- uCCUUGAggcccUCGACGGGCaaguccagcccgaacGCGCCGugGu- -3'
miRNA:   3'- -GGGACU-----AGCUGCUCG---------------CGUGGUugUug -5'
20014 3' -52.8 NC_004687.1 + 53594 0.66 0.98176
Target:  5'- gUCCUGuucguccUCGACGAGUGCcacaaggugaucGCCGAgucCGGCg -3'
miRNA:   3'- -GGGACu------AGCUGCUCGCG------------UGGUU---GUUG- -5'
20014 3' -52.8 NC_004687.1 + 107730 0.66 0.98176
Target:  5'- gCCCgcaagcucAUCGACagucugGAGCGCcccgacGCCGACAGCc -3'
miRNA:   3'- -GGGac------UAGCUG------CUCGCG------UGGUUGUUG- -5'
20014 3' -52.8 NC_004687.1 + 107883 0.66 0.98176
Target:  5'- cCCCcGAgguggugcUCGACGAggucgaccGCGCcACCAAgAGCg -3'
miRNA:   3'- -GGGaCU--------AGCUGCU--------CGCG-UGGUUgUUG- -5'
20014 3' -52.8 NC_004687.1 + 89348 0.66 0.98176
Target:  5'- aCC-GAUCGGCGuAGuCGCGCCGGuCggUg -3'
miRNA:   3'- gGGaCUAGCUGC-UC-GCGUGGUU-GuuG- -5'
20014 3' -52.8 NC_004687.1 + 91862 0.66 0.98176
Target:  5'- gCCCg---CGAgGAGCGCgaucguGCCGAgGACu -3'
miRNA:   3'- -GGGacuaGCUgCUCGCG------UGGUUgUUG- -5'
20014 3' -52.8 NC_004687.1 + 108203 0.66 0.98176
Target:  5'- -gCUGGUCGACGuucgggcuguAGCcgccCACCGACGAUc -3'
miRNA:   3'- ggGACUAGCUGC----------UCGc---GUGGUUGUUG- -5'
20014 3' -52.8 NC_004687.1 + 3071 0.66 0.98176
Target:  5'- gCCUG-UCGugGAuGCcaGCACCAggccuggagACGGCg -3'
miRNA:   3'- gGGACuAGCugCU-CG--CGUGGU---------UGUUG- -5'
20014 3' -52.8 NC_004687.1 + 36702 0.66 0.98176
Target:  5'- gCCaaGGUgccCGAGCGCACCGGCGGg -3'
miRNA:   3'- -GGgaCUAgcuGCUCGCGUGGUUGUUg -5'
20014 3' -52.8 NC_004687.1 + 137789 0.66 0.98176
Target:  5'- aCCgUGGUCGugcuggcgGCGuGGcCGCGCuCAACAGCu -3'
miRNA:   3'- -GGgACUAGC--------UGC-UC-GCGUG-GUUGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.