miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20017 3' -54.4 NC_004687.1 + 104279 0.65 0.966465
Target:  5'- uAGGUcaccgccguguagaGAUCAUCgGGcaucaggugcgaGCCugCGAUGGu -3'
miRNA:   3'- cUCCA--------------CUAGUAGgCC------------UGGugGCUACC- -5'
20017 3' -54.4 NC_004687.1 + 63567 0.66 0.964199
Target:  5'- cGAGGUGuacgcgCAUCgGGAUUACUacaaggagcaGAUGGa -3'
miRNA:   3'- -CUCCACua----GUAGgCCUGGUGG----------CUACC- -5'
20017 3' -54.4 NC_004687.1 + 19212 0.66 0.964199
Target:  5'- cGAGGUGGUCGaCCuGGuCCGCCa---- -3'
miRNA:   3'- -CUCCACUAGUaGG-CCuGGUGGcuacc -5'
20017 3' -54.4 NC_004687.1 + 70169 0.66 0.960779
Target:  5'- cGAGG---UCAUCCGGuuCACCGAc-- -3'
miRNA:   3'- -CUCCacuAGUAGGCCugGUGGCUacc -5'
20017 3' -54.4 NC_004687.1 + 106291 0.66 0.960779
Target:  5'- cGGGGUGGagccggUgGUCUcGACCACCGA-GGc -3'
miRNA:   3'- -CUCCACU------AgUAGGcCUGGUGGCUaCC- -5'
20017 3' -54.4 NC_004687.1 + 38410 0.66 0.959711
Target:  5'- cGGGGcgccccgcaccugcUGcgCAgcuUCCGGACC-CUGAUGGc -3'
miRNA:   3'- -CUCC--------------ACuaGU---AGGCCUGGuGGCUACC- -5'
20017 3' -54.4 NC_004687.1 + 67676 0.66 0.957141
Target:  5'- aGGGUGGUgGaCgGGACCacGCCGuUGGg -3'
miRNA:   3'- cUCCACUAgUaGgCCUGG--UGGCuACC- -5'
20017 3' -54.4 NC_004687.1 + 40544 0.66 0.956005
Target:  5'- -cGGUGcaAUCGuugaaaacgagacuUCUGGACCGCCGGguccGGa -3'
miRNA:   3'- cuCCAC--UAGU--------------AGGCCUGGUGGCUa---CC- -5'
20017 3' -54.4 NC_004687.1 + 47211 0.66 0.953674
Target:  5'- cGGGGUGGUCGacaUCUGGAUgcacuugucgucgaaGCCGGUGa -3'
miRNA:   3'- -CUCCACUAGU---AGGCCUGg--------------UGGCUACc -5'
20017 3' -54.4 NC_004687.1 + 69589 0.66 0.953278
Target:  5'- cGGGaGAgCAUCCGGAUcaacccggaCACCGGUGa -3'
miRNA:   3'- cUCCaCUaGUAGGCCUG---------GUGGCUACc -5'
20017 3' -54.4 NC_004687.1 + 3673 0.66 0.953278
Target:  5'- ----cGAUCGUCCuGGCCACCGGg-- -3'
miRNA:   3'- cuccaCUAGUAGGcCUGGUGGCUacc -5'
20017 3' -54.4 NC_004687.1 + 25380 0.66 0.953278
Target:  5'- aAGGUGucUCGUCCGGcCUGCUGGUa- -3'
miRNA:   3'- cUCCACu-AGUAGGCCuGGUGGCUAcc -5'
20017 3' -54.4 NC_004687.1 + 92023 0.66 0.953278
Target:  5'- -cGGauGUCGUCgGGAUCGCCGccGUGGu -3'
miRNA:   3'- cuCCacUAGUAGgCCUGGUGGC--UACC- -5'
20017 3' -54.4 NC_004687.1 + 137461 0.66 0.953278
Target:  5'- gGAGucGUcGAUCAgaUUCGGGaCACCGAUGGa -3'
miRNA:   3'- -CUC--CA-CUAGU--AGGCCUgGUGGCUACC- -5'
20017 3' -54.4 NC_004687.1 + 16106 0.66 0.949187
Target:  5'- -cGGUGuauGUCgugGUCaGGGCCACCGAgGGg -3'
miRNA:   3'- cuCCAC---UAG---UAGgCCUGGUGGCUaCC- -5'
20017 3' -54.4 NC_004687.1 + 107353 0.66 0.949187
Target:  5'- uGGGGU--UCAaCCGGACCAgaaGGUGGa -3'
miRNA:   3'- -CUCCAcuAGUaGGCCUGGUgg-CUACC- -5'
20017 3' -54.4 NC_004687.1 + 151839 0.66 0.949187
Target:  5'- -cGGUcugGAUCuUCCGGcGCCuGCUGAUGGc -3'
miRNA:   3'- cuCCA---CUAGuAGGCC-UGG-UGGCUACC- -5'
20017 3' -54.4 NC_004687.1 + 25515 0.67 0.940309
Target:  5'- uGGGUGGUCGcCCaGGGCgGCuCGGUGa -3'
miRNA:   3'- cUCCACUAGUaGG-CCUGgUG-GCUACc -5'
20017 3' -54.4 NC_004687.1 + 84778 0.67 0.935517
Target:  5'- cGAGGUGAUgUcgCCGGucuCCGgagCGAUGGa -3'
miRNA:   3'- -CUCCACUA-GuaGGCCu--GGUg--GCUACC- -5'
20017 3' -54.4 NC_004687.1 + 36613 0.67 0.925219
Target:  5'- aGAGcGUGGUCuugCCGGugcccucgguGCCGCCGAUc- -3'
miRNA:   3'- -CUC-CACUAGua-GGCC----------UGGUGGCUAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.