Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2003 | 3' | -62.9 | NC_001347.2 | + | 156898 | 0.69 | 0.533753 |
Target: 5'- cAUCCgCCGUCUCCGCcguGCGCgCCGu- -3' miRNA: 3'- -UGGGgGGCAGAGGCGu--UGUGgGGCcg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 24653 | 0.69 | 0.552134 |
Target: 5'- gGCCUCCUGg---CGC-ACAUCCCGGCg -3' miRNA: 3'- -UGGGGGGCagagGCGuUGUGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 192173 | 0.69 | 0.542918 |
Target: 5'- uUCCgCCGUCUCCGgAugaGCGgCCgCGGCg -3' miRNA: 3'- uGGGgGGCAGAGGCgU---UGUgGG-GCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 136480 | 0.69 | 0.533753 |
Target: 5'- gACCCuCCCG-CgggcccuggcCCGCGcauGCGCCCCGGg -3' miRNA: 3'- -UGGG-GGGCaGa---------GGCGU---UGUGGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 66202 | 0.69 | 0.552134 |
Target: 5'- uGCCaCCCGUCgCCGCGcaACACCaCCcGCg -3' miRNA: 3'- -UGGgGGGCAGaGGCGU--UGUGG-GGcCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 2080 | 0.69 | 0.552134 |
Target: 5'- -aCCUgUGcCUCCGCAgccguacgGCGCCgCCGGCg -3' miRNA: 3'- ugGGGgGCaGAGGCGU--------UGUGG-GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 127793 | 0.69 | 0.570702 |
Target: 5'- cGCCUgcaCCGUCgCCGU-ACACCCCaGCg -3' miRNA: 3'- -UGGGg--GGCAGaGGCGuUGUGGGGcCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 195863 | 0.69 | 0.574434 |
Target: 5'- uGCCgCCCGa-UCCGCAGCAUUuucgcuggcucaacgCCGGCg -3' miRNA: 3'- -UGGgGGGCagAGGCGUUGUGG---------------GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 114103 | 0.69 | 0.570702 |
Target: 5'- aACCCCgCCGUC-CCGCGGguCCgcaCgGGCa -3' miRNA: 3'- -UGGGG-GGCAGaGGCGUUguGG---GgCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 113618 | 0.69 | 0.570702 |
Target: 5'- gGCCUCCaCGUCgUCGCAGCGCCggCUGGa -3' miRNA: 3'- -UGGGGG-GCAGaGGCGUUGUGG--GGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 41487 | 0.69 | 0.565114 |
Target: 5'- cACCCCCaucuccacaucuccaCGUCggaaaCCGCcGCACCCCGcCa -3' miRNA: 3'- -UGGGGG---------------GCAGa----GGCGuUGUGGGGCcG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 116872 | 0.7 | 0.488844 |
Target: 5'- aGCCCUCC-UCUUCGCcgcccgcGCGCCCCccgGGCa -3' miRNA: 3'- -UGGGGGGcAGAGGCGu------UGUGGGG---CCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 109460 | 0.71 | 0.462761 |
Target: 5'- cGCCCCgCGUCaccggCgGCGGCGCCauGGCg -3' miRNA: 3'- -UGGGGgGCAGa----GgCGUUGUGGggCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 192467 | 0.71 | 0.445784 |
Target: 5'- cGCCUCCCG-CUCacaacgcgUGCAACACcugcgcgaggCCCGGCg -3' miRNA: 3'- -UGGGGGGCaGAG--------GCGUUGUG----------GGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 197140 | 0.72 | 0.389257 |
Target: 5'- gGCCCgCCGUCgUCGC--CGCCCCGGg -3' miRNA: 3'- -UGGGgGGCAGaGGCGuuGUGGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 34187 | 0.72 | 0.412909 |
Target: 5'- cACCUgUCGUCgacaugUCGCGACACCCgGGUc -3' miRNA: 3'- -UGGGgGGCAGa-----GGCGUUGUGGGgCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 40233 | 0.73 | 0.323831 |
Target: 5'- cACCCgCCacacgC-CCGCGACACaCCCGGCa -3' miRNA: 3'- -UGGGgGGca---GaGGCGUUGUG-GGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 178843 | 0.73 | 0.33068 |
Target: 5'- cCCCCCCGUcCUCUGU--CGUCCCGGCc -3' miRNA: 3'- uGGGGGGCA-GAGGCGuuGUGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 38401 | 0.73 | 0.323831 |
Target: 5'- -gCCUCCGUCUCCGUgccgcuCGCCgCUGGCg -3' miRNA: 3'- ugGGGGGCAGAGGCGuu----GUGG-GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 189756 | 0.74 | 0.284966 |
Target: 5'- cCCCCCCGUCUCCGguGaaagGCCggGGCa -3' miRNA: 3'- uGGGGGGCAGAGGCguUg---UGGggCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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