Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2003 | 3' | -62.9 | NC_001347.2 | + | 41487 | 0.69 | 0.565114 |
Target: 5'- cACCCCCaucuccacaucuccaCGUCggaaaCCGCcGCACCCCGcCa -3' miRNA: 3'- -UGGGGG---------------GCAGa----GGCGuUGUGGGGCcG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 156898 | 0.69 | 0.533753 |
Target: 5'- cAUCCgCCGUCUCCGCcguGCGCgCCGu- -3' miRNA: 3'- -UGGGgGGCAGAGGCGu--UGUGgGGCcg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 2080 | 0.69 | 0.552134 |
Target: 5'- -aCCUgUGcCUCCGCAgccguacgGCGCCgCCGGCg -3' miRNA: 3'- ugGGGgGCaGAGGCGU--------UGUGG-GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 136529 | 0.69 | 0.552134 |
Target: 5'- cACCCCUCcuuauauauagGUUUUCcauGCGGCAuCCCCGGCg -3' miRNA: 3'- -UGGGGGG-----------CAGAGG---CGUUGU-GGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 24653 | 0.69 | 0.552134 |
Target: 5'- gGCCUCCUGg---CGC-ACAUCCCGGCg -3' miRNA: 3'- -UGGGGGGCagagGCGuUGUGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 93225 | 0.68 | 0.608237 |
Target: 5'- aGCUCgCUGagCggcagCgGCGGCACCCCGGCu -3' miRNA: 3'- -UGGGgGGCa-Ga----GgCGUUGUGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 25294 | 0.68 | 0.617674 |
Target: 5'- uGCCCCCCGggaUCCaaGAgACCCggcUGGCg -3' miRNA: 3'- -UGGGGGGCag-AGGcgUUgUGGG---GCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 229184 | 0.68 | 0.589417 |
Target: 5'- aACCUCCCcuacgCggCGCGAacaGCCCCGGCc -3' miRNA: 3'- -UGGGGGGca---GagGCGUUg--UGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 126848 | 0.68 | 0.598817 |
Target: 5'- aAUCCCCCcaCUCgGCGACcaGCCCgcaCGGCu -3' miRNA: 3'- -UGGGGGGcaGAGgCGUUG--UGGG---GCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 38650 | 0.68 | 0.589417 |
Target: 5'- cGCCUgCCCGgcgUCUGCAGCGCCaccgucgugCCGGCc -3' miRNA: 3'- -UGGG-GGGCag-AGGCGUUGUGG---------GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 129021 | 0.68 | 0.580043 |
Target: 5'- gACCCUgCGUCcCCGCAcgACgACCCCGcuacaGCa -3' miRNA: 3'- -UGGGGgGCAGaGGCGU--UG-UGGGGC-----CG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 1063 | 0.68 | 0.627119 |
Target: 5'- aACCCCgCGgg-CCGCcgGGCGCCCCuccgaguagcGGCa -3' miRNA: 3'- -UGGGGgGCagaGGCG--UUGUGGGG----------CCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 191210 | 0.68 | 0.636567 |
Target: 5'- cGCCgCUCGgagCaCCGCcGCAgCCCGGCu -3' miRNA: 3'- -UGGgGGGCa--GaGGCGuUGUgGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 135594 | 0.68 | 0.618618 |
Target: 5'- gGCCCaccuaCCGUCgucgucggccgaccgCCGCGAC-CCCCaGCc -3' miRNA: 3'- -UGGGg----GGCAGa--------------GGCGUUGuGGGGcCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 38307 | 0.68 | 0.636567 |
Target: 5'- cGCgCCCCCG-C-CgGCGGCGCCguaCGGCu -3' miRNA: 3'- -UG-GGGGGCaGaGgCGUUGUGGg--GCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 68432 | 0.68 | 0.640346 |
Target: 5'- aGCUCCCCGUCgcCCGUAAUgucaauagacaugaaGCCCUGcuGCg -3' miRNA: 3'- -UGGGGGGCAGa-GGCGUUG---------------UGGGGC--CG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 154122 | 0.67 | 0.645069 |
Target: 5'- aACCCCCCG-CUggugccaCCGCcguuguGACGgCCCGGa -3' miRNA: 3'- -UGGGGGGCaGA-------GGCG------UUGUgGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 21745 | 0.67 | 0.655449 |
Target: 5'- uACCgucggUCCUGUCUCUGCucuGCGCUaCGGCg -3' miRNA: 3'- -UGG-----GGGGCAGAGGCGu--UGUGGgGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 167300 | 0.67 | 0.646013 |
Target: 5'- cGCgCUCCGcCUCCGUGGCACCCUu-- -3' miRNA: 3'- -UGgGGGGCaGAGGCGUUGUGGGGccg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 46105 | 0.67 | 0.655449 |
Target: 5'- uCCCgCCGUUUCCGaaCAACccACCCgGGUu -3' miRNA: 3'- uGGGgGGCAGAGGC--GUUG--UGGGgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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