Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2003 | 3' | -62.9 | NC_001347.2 | + | 136480 | 0.69 | 0.533753 |
Target: 5'- gACCCuCCCG-CgggcccuggcCCGCGcauGCGCCCCGGg -3' miRNA: 3'- -UGGG-GGGCaGa---------GGCGU---UGUGGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 136529 | 0.69 | 0.552134 |
Target: 5'- cACCCCUCcuuauauauagGUUUUCcauGCGGCAuCCCCGGCg -3' miRNA: 3'- -UGGGGGG-----------CAGAGG---CGUUGU-GGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 143709 | 0.66 | 0.720678 |
Target: 5'- aGCUCUCCGUCgccuaUGCGGCAUCucgCCGGUg -3' miRNA: 3'- -UGGGGGGCAGag---GCGUUGUGG---GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 154122 | 0.67 | 0.645069 |
Target: 5'- aACCCCCCG-CUggugccaCCGCcguuguGACGgCCCGGa -3' miRNA: 3'- -UGGGGGGCaGA-------GGCG------UUGUgGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 156898 | 0.69 | 0.533753 |
Target: 5'- cAUCCgCCGUCUCCGCcguGCGCgCCGu- -3' miRNA: 3'- -UGGGgGGCAGAGGCGu--UGUGgGGCcg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 166618 | 0.67 | 0.66487 |
Target: 5'- cACCgucaCgCCGUcCUCCGagaGGCGCgCCCGGCc -3' miRNA: 3'- -UGGg---G-GGCA-GAGGCg--UUGUG-GGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 167300 | 0.67 | 0.646013 |
Target: 5'- cGCgCUCCGcCUCCGUGGCACCCUu-- -3' miRNA: 3'- -UGgGGGGCaGAGGCGUUGUGGGGccg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 174090 | 0.66 | 0.720678 |
Target: 5'- aACUaa-CGUgUCCGCgGACACCCgCGGCc -3' miRNA: 3'- -UGGgggGCAgAGGCG-UUGUGGG-GCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 174249 | 0.66 | 0.710575 |
Target: 5'- gACCUCCgCGUCggucgccgccUCCGCGGC-CCguuucgacgaaauCCGGCg -3' miRNA: 3'- -UGGGGG-GCAG----------AGGCGUUGuGG-------------GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 178843 | 0.73 | 0.33068 |
Target: 5'- cCCCCCCGUcCUCUGU--CGUCCCGGCc -3' miRNA: 3'- uGGGGGGCA-GAGGCGuuGUGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 180470 | 0.66 | 0.702258 |
Target: 5'- --gCUCCGUUcgCGCAGCGCCCUGGg -3' miRNA: 3'- uggGGGGCAGagGCGUUGUGGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 189756 | 0.74 | 0.284966 |
Target: 5'- cCCCCCCGUCUCCGguGaaagGCCggGGCa -3' miRNA: 3'- uGGGGGGCAGAGGCguUg---UGGggCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 190651 | 0.75 | 0.249878 |
Target: 5'- aACUCCaCCGUCUgCCGCGguuGCACCCCGa- -3' miRNA: 3'- -UGGGG-GGCAGA-GGCGU---UGUGGGGCcg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 191210 | 0.68 | 0.636567 |
Target: 5'- cGCCgCUCGgagCaCCGCcGCAgCCCGGCu -3' miRNA: 3'- -UGGgGGGCa--GaGGCGuUGUgGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 192173 | 0.69 | 0.542918 |
Target: 5'- uUCCgCCGUCUCCGgAugaGCGgCCgCGGCg -3' miRNA: 3'- uGGGgGGCAGAGGCgU---UGUgGG-GCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 192467 | 0.71 | 0.445784 |
Target: 5'- cGCCUCCCG-CUCacaacgcgUGCAACACcugcgcgaggCCCGGCg -3' miRNA: 3'- -UGGGGGGCaGAG--------GCGUUGUG----------GGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 195863 | 0.69 | 0.574434 |
Target: 5'- uGCCgCCCGa-UCCGCAGCAUUuucgcuggcucaacgCCGGCg -3' miRNA: 3'- -UGGgGGGCagAGGCGUUGUGG---------------GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 197140 | 0.72 | 0.389257 |
Target: 5'- gGCCCgCCGUCgUCGC--CGCCCCGGg -3' miRNA: 3'- -UGGGgGGCAGaGGCGuuGUGGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 204633 | 0.66 | 0.736133 |
Target: 5'- -aCCCCCGaUggcugugcgaguaaCUCCGUug-GCCCCGGUa -3' miRNA: 3'- ugGGGGGC-A--------------GAGGCGuugUGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 222080 | 0.66 | 0.728886 |
Target: 5'- cCCCCCCaaaucauGUCUCUa-GAUGCCgCCGGCc -3' miRNA: 3'- uGGGGGG-------CAGAGGcgUUGUGG-GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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