Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2003 | 3' | -62.9 | NC_001347.2 | + | 154122 | 0.67 | 0.645069 |
Target: 5'- aACCCCCCG-CUggugccaCCGCcguuguGACGgCCCGGa -3' miRNA: 3'- -UGGGGGGCaGA-------GGCG------UUGUgGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 143709 | 0.66 | 0.720678 |
Target: 5'- aGCUCUCCGUCgccuaUGCGGCAUCucgCCGGUg -3' miRNA: 3'- -UGGGGGGCAGag---GCGUUGUGG---GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 136529 | 0.69 | 0.552134 |
Target: 5'- cACCCCUCcuuauauauagGUUUUCcauGCGGCAuCCCCGGCg -3' miRNA: 3'- -UGGGGGG-----------CAGAGG---CGUUGU-GGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 136480 | 0.69 | 0.533753 |
Target: 5'- gACCCuCCCG-CgggcccuggcCCGCGcauGCGCCCCGGg -3' miRNA: 3'- -UGGG-GGGCaGa---------GGCGU---UGUGGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 135786 | 0.67 | 0.683636 |
Target: 5'- gACCCcggguCCCGUCcauUCCGCGGCggguggACCgggaagCCGGCg -3' miRNA: 3'- -UGGG-----GGGCAG---AGGCGUUG------UGG------GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 135594 | 0.68 | 0.618618 |
Target: 5'- gGCCCaccuaCCGUCgucgucggccgaccgCCGCGAC-CCCCaGCc -3' miRNA: 3'- -UGGGg----GGCAGa--------------GGCGUUGuGGGGcCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 135123 | 0.66 | 0.702258 |
Target: 5'- gGCCCaCCGUCgaccCCG-AGCGCuUCCGGCc -3' miRNA: 3'- -UGGGgGGCAGa---GGCgUUGUG-GGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 132670 | 0.66 | 0.738839 |
Target: 5'- uCUUgCCGUCgUCCGU--CACCCgGGCg -3' miRNA: 3'- uGGGgGGCAG-AGGCGuuGUGGGgCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 129021 | 0.68 | 0.580043 |
Target: 5'- gACCCUgCGUCcCCGCAcgACgACCCCGcuacaGCa -3' miRNA: 3'- -UGGGGgGCAGaGGCGU--UG-UGGGGC-----CG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 128410 | 0.66 | 0.738839 |
Target: 5'- cGCCCCaCGUcCUCCucuuuCAGC-CCCaCGGCg -3' miRNA: 3'- -UGGGGgGCA-GAGGc----GUUGuGGG-GCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 127793 | 0.69 | 0.570702 |
Target: 5'- cGCCUgcaCCGUCgCCGU-ACACCCCaGCg -3' miRNA: 3'- -UGGGg--GGCAGaGGCGuUGUGGGGcCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 127148 | 0.66 | 0.720678 |
Target: 5'- cGCUgCCCGUCUaCCGCGuACACCugcccaaugaCCaGCa -3' miRNA: 3'- -UGGgGGGCAGA-GGCGU-UGUGG----------GGcCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 126848 | 0.68 | 0.598817 |
Target: 5'- aAUCCCCCcaCUCgGCGACcaGCCCgcaCGGCu -3' miRNA: 3'- -UGGGGGGcaGAGgCGUUG--UGGG---GCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 116872 | 0.7 | 0.488844 |
Target: 5'- aGCCCUCC-UCUUCGCcgcccgcGCGCCCCccgGGCa -3' miRNA: 3'- -UGGGGGGcAGAGGCGu------UGUGGGG---CCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 114435 | 0.67 | 0.683636 |
Target: 5'- cGCCgCCCGUCUCaGcCAGCGCcugugucaCCCGcGCu -3' miRNA: 3'- -UGGgGGGCAGAGgC-GUUGUG--------GGGC-CG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 114103 | 0.69 | 0.570702 |
Target: 5'- aACCCCgCCGUC-CCGCGGguCCgcaCgGGCa -3' miRNA: 3'- -UGGGG-GGCAGaGGCGUUguGG---GgCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 113618 | 0.69 | 0.570702 |
Target: 5'- gGCCUCCaCGUCgUCGCAGCGCCggCUGGa -3' miRNA: 3'- -UGGGGG-GCAGaGGCGUUGUGG--GGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 109460 | 0.71 | 0.462761 |
Target: 5'- cGCCCCgCGUCaccggCgGCGGCGCCauGGCg -3' miRNA: 3'- -UGGGGgGCAGa----GgCGUUGUGGggCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 93225 | 0.68 | 0.608237 |
Target: 5'- aGCUCgCUGagCggcagCgGCGGCACCCCGGCu -3' miRNA: 3'- -UGGGgGGCa-Ga----GgCGUUGUGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 85994 | 0.74 | 0.284966 |
Target: 5'- cACCCgaaCCGUCcgccgCCGCGGCG-CCCGGCa -3' miRNA: 3'- -UGGGg--GGCAGa----GGCGUUGUgGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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