Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2003 | 3' | -62.9 | NC_001347.2 | + | 20343 | 0.66 | 0.729794 |
Target: 5'- cGCCCCaguuCGUCUCCuaauCGACGuguCCgCGGCg -3' miRNA: 3'- -UGGGGg---GCAGAGGc---GUUGU---GGgGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 204633 | 0.66 | 0.736133 |
Target: 5'- -aCCCCCGaUggcugugcgaguaaCUCCGUug-GCCCCGGUa -3' miRNA: 3'- ugGGGGGC-A--------------GAGGCGuugUGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 128410 | 0.66 | 0.738839 |
Target: 5'- cGCCCCaCGUcCUCCucuuuCAGC-CCCaCGGCg -3' miRNA: 3'- -UGGGGgGCA-GAGGc----GUUGuGGG-GCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 132670 | 0.66 | 0.738839 |
Target: 5'- uCUUgCCGUCgUCCGU--CACCCgGGCg -3' miRNA: 3'- uGGGgGGCAG-AGGCGuuGUGGGgCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 21642 | 0.66 | 0.746911 |
Target: 5'- -gCCUuuGUCggCGCGGCucuucucGCCCUGGCg -3' miRNA: 3'- ugGGGggCAGagGCGUUG-------UGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 135123 | 0.66 | 0.702258 |
Target: 5'- gGCCCaCCGUCgaccCCG-AGCGCuUCCGGCc -3' miRNA: 3'- -UGGGgGGCAGa---GGCgUUGUG-GGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 135786 | 0.67 | 0.683636 |
Target: 5'- gACCCcggguCCCGUCcauUCCGCGGCggguggACCgggaagCCGGCg -3' miRNA: 3'- -UGGG-----GGGCAG---AGGCGUUG------UGG------GGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 38307 | 0.68 | 0.636567 |
Target: 5'- cGCgCCCCCG-C-CgGCGGCGCCguaCGGCu -3' miRNA: 3'- -UG-GGGGGCaGaGgCGUUGUGGg--GCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 154122 | 0.67 | 0.645069 |
Target: 5'- aACCCCCCG-CUggugccaCCGCcguuguGACGgCCCGGa -3' miRNA: 3'- -UGGGGGGCaGA-------GGCG------UUGUgGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 21745 | 0.67 | 0.655449 |
Target: 5'- uACCgucggUCCUGUCUCUGCucuGCGCUaCGGCg -3' miRNA: 3'- -UGG-----GGGGCAGAGGCGu--UGUGGgGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 167300 | 0.67 | 0.646013 |
Target: 5'- cGCgCUCCGcCUCCGUGGCACCCUu-- -3' miRNA: 3'- -UGgGGGGCaGAGGCGUUGUGGGGccg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 46105 | 0.67 | 0.655449 |
Target: 5'- uCCCgCCGUUUCCGaaCAACccACCCgGGUu -3' miRNA: 3'- uGGGgGGCAGAGGC--GUUG--UGGGgCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 41143 | 0.67 | 0.655449 |
Target: 5'- gGCUaCCCCGUCccCCGCGcggaaaucCGCCgCGGCg -3' miRNA: 3'- -UGG-GGGGCAGa-GGCGUu-------GUGGgGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 166618 | 0.67 | 0.66487 |
Target: 5'- cACCgucaCgCCGUcCUCCGagaGGCGCgCCCGGCc -3' miRNA: 3'- -UGGg---G-GGCA-GAGGCg--UUGUG-GGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 75391 | 0.67 | 0.66487 |
Target: 5'- cUCCCCCG-CUCCaagcgggaGCGGCGgCCgUGGCg -3' miRNA: 3'- uGGGGGGCaGAGG--------CGUUGU-GGgGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 67357 | 0.67 | 0.674268 |
Target: 5'- aGCCgCCgCCGUCgCCGC--CGCCUCGGa -3' miRNA: 3'- -UGG-GG-GGCAGaGGCGuuGUGGGGCCg -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 74025 | 0.67 | 0.683636 |
Target: 5'- aACCaaaggacgaCCCGUCUCCccccGCACCCgGGUu -3' miRNA: 3'- -UGGg--------GGGCAGAGGcgu-UGUGGGgCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 225497 | 0.67 | 0.683636 |
Target: 5'- uGCUgCCCCGgcguUCUCCagaa-GCCCCGGCg -3' miRNA: 3'- -UGG-GGGGC----AGAGGcguugUGGGGCCG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 114435 | 0.67 | 0.683636 |
Target: 5'- cGCCgCCCGUCUCaGcCAGCGCcugugucaCCCGcGCu -3' miRNA: 3'- -UGGgGGGCAGAGgC-GUUGUG--------GGGC-CG- -5' |
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2003 | 3' | -62.9 | NC_001347.2 | + | 180470 | 0.66 | 0.702258 |
Target: 5'- --gCUCCGUUcgCGCAGCGCCCUGGg -3' miRNA: 3'- uggGGGGCAGagGCGUUGUGGGGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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