miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2004 3' -57.5 NC_001347.2 + 59222 0.66 0.933659
Target:  5'- aUAAGAACACCCCCUucugcacacccaacgUGCagaCUCGGcGGg -3'
miRNA:   3'- -AUUUUUGUGGGGGG---------------GCGgg-GAGCU-CC- -5'
2004 3' -57.5 NC_001347.2 + 40386 0.66 0.931715
Target:  5'- -cAAAACACCgCCggugcggggCCGCguggugggUCCUCGAGGg -3'
miRNA:   3'- auUUUUGUGGgGG---------GGCG--------GGGAGCUCC- -5'
2004 3' -57.5 NC_001347.2 + 80269 0.66 0.931715
Target:  5'- aGGAGACACCgUCgCCGUgCCCgaaGAGGa -3'
miRNA:   3'- aUUUUUGUGGgGG-GGCG-GGGag-CUCC- -5'
2004 3' -57.5 NC_001347.2 + 75383 0.66 0.931715
Target:  5'- cGGAuuCuCUCCCCCGCUCCaagCGGGa -3'
miRNA:   3'- aUUUuuGuGGGGGGGCGGGGa--GCUCc -5'
2004 3' -57.5 NC_001347.2 + 39482 0.66 0.926698
Target:  5'- --cGAAgGCCCUCCgGCCCCgCGGc- -3'
miRNA:   3'- auuUUUgUGGGGGGgCGGGGaGCUcc -5'
2004 3' -57.5 NC_001347.2 + 189108 0.66 0.926698
Target:  5'- -cAAAACACCgugUCCaCCaCCCCUCgGAGGc -3'
miRNA:   3'- auUUUUGUGG---GGG-GGcGGGGAG-CUCC- -5'
2004 3' -57.5 NC_001347.2 + 113041 0.66 0.926698
Target:  5'- --uGGACGCCgCCUCUGCCggCUcCGAGGg -3'
miRNA:   3'- auuUUUGUGG-GGGGGCGGg-GA-GCUCC- -5'
2004 3' -57.5 NC_001347.2 + 110088 0.66 0.921461
Target:  5'- --cAGGCAUCgUCCUCGCCCggUGAGGg -3'
miRNA:   3'- auuUUUGUGG-GGGGGCGGGgaGCUCC- -5'
2004 3' -57.5 NC_001347.2 + 79676 0.66 0.916003
Target:  5'- ----cGCGCUCUaCCUGCUCUUUGAGGa -3'
miRNA:   3'- auuuuUGUGGGG-GGGCGGGGAGCUCC- -5'
2004 3' -57.5 NC_001347.2 + 136834 0.66 0.910324
Target:  5'- gUGGAAGCuaggCUCCGCCCCUaCGGGGc -3'
miRNA:   3'- -AUUUUUGugggGGGGCGGGGA-GCUCC- -5'
2004 3' -57.5 NC_001347.2 + 114706 0.66 0.904427
Target:  5'- aAGAuGCGCauuaCCCCCGaCgCCUUCGAGa -3'
miRNA:   3'- aUUUuUGUGg---GGGGGC-G-GGGAGCUCc -5'
2004 3' -57.5 NC_001347.2 + 180661 0.66 0.904427
Target:  5'- ----uGCACCCCUuuGgCUUCgUCGAGGg -3'
miRNA:   3'- auuuuUGUGGGGGggC-GGGG-AGCUCC- -5'
2004 3' -57.5 NC_001347.2 + 129594 0.66 0.904427
Target:  5'- ---uGGCACCCuaCCCCGCCgaUCUCaAGGu -3'
miRNA:   3'- auuuUUGUGGG--GGGGCGG--GGAGcUCC- -5'
2004 3' -57.5 NC_001347.2 + 66219 0.67 0.891985
Target:  5'- ---cAACACCa-CCCGCgCCUUCGuGGg -3'
miRNA:   3'- auuuUUGUGGggGGGCG-GGGAGCuCC- -5'
2004 3' -57.5 NC_001347.2 + 118066 0.67 0.878701
Target:  5'- ---cAGCGCCUCCgCCucggacacgcGCCCUUCGAGa -3'
miRNA:   3'- auuuUUGUGGGGG-GG----------CGGGGAGCUCc -5'
2004 3' -57.5 NC_001347.2 + 80209 0.67 0.878701
Target:  5'- cGAGcGCACCCaCUCgucgCGCUCCUCGAGc -3'
miRNA:   3'- aUUUuUGUGGG-GGG----GCGGGGAGCUCc -5'
2004 3' -57.5 NC_001347.2 + 114096 0.68 0.864603
Target:  5'- cGAAGAgaACCCCgCCGUCCCgCGGGu -3'
miRNA:   3'- aUUUUUg-UGGGGgGGCGGGGaGCUCc -5'
2004 3' -57.5 NC_001347.2 + 136695 0.68 0.864603
Target:  5'- gUAAAAAUuuGCCCCCCCcgGUUCCg-GAGGa -3'
miRNA:   3'- -AUUUUUG--UGGGGGGG--CGGGGagCUCC- -5'
2004 3' -57.5 NC_001347.2 + 199911 0.68 0.85726
Target:  5'- gUGAAAACGCUguCCUCCGCCuCCUCa--- -3'
miRNA:   3'- -AUUUUUGUGG--GGGGGCGG-GGAGcucc -5'
2004 3' -57.5 NC_001347.2 + 23262 0.68 0.85726
Target:  5'- --uGGGCGCCcccaCCCCCGCgaCCCUCGcgcGGa -3'
miRNA:   3'- auuUUUGUGG----GGGGGCG--GGGAGCu--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.