Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2004 | 3' | -57.5 | NC_001347.2 | + | 230015 | 1.09 | 0.00351 |
Target: 5'- cUAAAAACACCCCCCCGCCCCUCGAGGa -3' miRNA: 3'- -AUUUUUGUGGGGGGGCGGGGAGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 536 | 1.09 | 0.00351 |
Target: 5'- cUAAAAACACCCCCCCGCCCCUCGAGGa -3' miRNA: 3'- -AUUUUUGUGGGGGGGCGGGGAGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 901 | 0.75 | 0.459825 |
Target: 5'- -----cCGCgCCCCCCGCCCCUUGGu- -3' miRNA: 3'- auuuuuGUG-GGGGGGCGGGGAGCUcc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 125168 | 0.72 | 0.631029 |
Target: 5'- -uAGGACGCgugaCCCCCGuUUCCUCGGGGa -3' miRNA: 3'- auUUUUGUGg---GGGGGC-GGGGAGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 129104 | 0.7 | 0.747076 |
Target: 5'- -----cCACCCUccuCCCGCCacgcaCUCGGGGg -3' miRNA: 3'- auuuuuGUGGGG---GGGCGGg----GAGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 186976 | 0.7 | 0.756334 |
Target: 5'- --uAAACuACCCCCCC-UCCCUCuAGGu -3' miRNA: 3'- auuUUUG-UGGGGGGGcGGGGAGcUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 125562 | 0.7 | 0.76549 |
Target: 5'- --cAAACAgCCCUCCGagagauagCCCUUGAGGa -3' miRNA: 3'- auuUUUGUgGGGGGGCg-------GGGAGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 133794 | 0.69 | 0.774537 |
Target: 5'- ----uGCACCCgCCCGaUCCCUCGucGGc -3' miRNA: 3'- auuuuUGUGGGgGGGC-GGGGAGCu-CC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 66735 | 0.69 | 0.774537 |
Target: 5'- -----cCACCaCCgCCGCCuCCUCGAGu -3' miRNA: 3'- auuuuuGUGG-GGgGGCGG-GGAGCUCc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 178840 | 0.69 | 0.783465 |
Target: 5'- -----cCACCCCCCCGUCCUcugUCGucccGGc -3' miRNA: 3'- auuuuuGUGGGGGGGCGGGG---AGCu---CC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 85814 | 0.69 | 0.792268 |
Target: 5'- aUGGAAGCGCCCag-CGCCCCgacgUGGGGu -3' miRNA: 3'- -AUUUUUGUGGGgggGCGGGGa---GCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 189748 | 0.69 | 0.809465 |
Target: 5'- cAAGAGUGCCCCCCCGUCuCCggugaaaggcCGGGGc -3' miRNA: 3'- aUUUUUGUGGGGGGGCGG-GGa---------GCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 82886 | 0.69 | 0.817845 |
Target: 5'- ----cGCGCCCCCaUCGCCUCcCGAGc -3' miRNA: 3'- auuuuUGUGGGGG-GGCGGGGaGCUCc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 65390 | 0.69 | 0.817845 |
Target: 5'- --uGAGCACCgCUgCCGCgCC-CGAGGg -3' miRNA: 3'- auuUUUGUGG-GGgGGCGgGGaGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 199911 | 0.68 | 0.85726 |
Target: 5'- gUGAAAACGCUguCCUCCGCCuCCUCa--- -3' miRNA: 3'- -AUUUUUGUGG--GGGGGCGG-GGAGcucc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 23262 | 0.68 | 0.85726 |
Target: 5'- --uGGGCGCCcccaCCCCCGCgaCCCUCGcgcGGa -3' miRNA: 3'- auuUUUGUGG----GGGGGCG--GGGAGCu--CC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 136695 | 0.68 | 0.864603 |
Target: 5'- gUAAAAAUuuGCCCCCCCcgGUUCCg-GAGGa -3' miRNA: 3'- -AUUUUUG--UGGGGGGG--CGGGGagCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 114096 | 0.68 | 0.864603 |
Target: 5'- cGAAGAgaACCCCgCCGUCCCgCGGGu -3' miRNA: 3'- aUUUUUg-UGGGGgGGCGGGGaGCUCc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 118066 | 0.67 | 0.878701 |
Target: 5'- ---cAGCGCCUCCgCCucggacacgcGCCCUUCGAGa -3' miRNA: 3'- auuuUUGUGGGGG-GG----------CGGGGAGCUCc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 80209 | 0.67 | 0.878701 |
Target: 5'- cGAGcGCACCCaCUCgucgCGCUCCUCGAGc -3' miRNA: 3'- aUUUuUGUGGG-GGG----GCGGGGAGCUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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