miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2004 3' -57.5 NC_001347.2 + 82886 0.69 0.817845
Target:  5'- ----cGCGCCCCCaUCGCCUCcCGAGc -3'
miRNA:   3'- auuuuUGUGGGGG-GGCGGGGaGCUCc -5'
2004 3' -57.5 NC_001347.2 + 65390 0.69 0.817845
Target:  5'- --uGAGCACCgCUgCCGCgCC-CGAGGg -3'
miRNA:   3'- auuUUUGUGG-GGgGGCGgGGaGCUCC- -5'
2004 3' -57.5 NC_001347.2 + 189748 0.69 0.809465
Target:  5'- cAAGAGUGCCCCCCCGUCuCCggugaaaggcCGGGGc -3'
miRNA:   3'- aUUUUUGUGGGGGGGCGG-GGa---------GCUCC- -5'
2004 3' -57.5 NC_001347.2 + 85814 0.69 0.792268
Target:  5'- aUGGAAGCGCCCag-CGCCCCgacgUGGGGu -3'
miRNA:   3'- -AUUUUUGUGGGgggGCGGGGa---GCUCC- -5'
2004 3' -57.5 NC_001347.2 + 178840 0.69 0.783465
Target:  5'- -----cCACCCCCCCGUCCUcugUCGucccGGc -3'
miRNA:   3'- auuuuuGUGGGGGGGCGGGG---AGCu---CC- -5'
2004 3' -57.5 NC_001347.2 + 66735 0.69 0.774537
Target:  5'- -----cCACCaCCgCCGCCuCCUCGAGu -3'
miRNA:   3'- auuuuuGUGG-GGgGGCGG-GGAGCUCc -5'
2004 3' -57.5 NC_001347.2 + 133794 0.69 0.774537
Target:  5'- ----uGCACCCgCCCGaUCCCUCGucGGc -3'
miRNA:   3'- auuuuUGUGGGgGGGC-GGGGAGCu-CC- -5'
2004 3' -57.5 NC_001347.2 + 125562 0.7 0.76549
Target:  5'- --cAAACAgCCCUCCGagagauagCCCUUGAGGa -3'
miRNA:   3'- auuUUUGUgGGGGGGCg-------GGGAGCUCC- -5'
2004 3' -57.5 NC_001347.2 + 186976 0.7 0.756334
Target:  5'- --uAAACuACCCCCCC-UCCCUCuAGGu -3'
miRNA:   3'- auuUUUG-UGGGGGGGcGGGGAGcUCC- -5'
2004 3' -57.5 NC_001347.2 + 129104 0.7 0.747076
Target:  5'- -----cCACCCUccuCCCGCCacgcaCUCGGGGg -3'
miRNA:   3'- auuuuuGUGGGG---GGGCGGg----GAGCUCC- -5'
2004 3' -57.5 NC_001347.2 + 125168 0.72 0.631029
Target:  5'- -uAGGACGCgugaCCCCCGuUUCCUCGGGGa -3'
miRNA:   3'- auUUUUGUGg---GGGGGC-GGGGAGCUCC- -5'
2004 3' -57.5 NC_001347.2 + 901 0.75 0.459825
Target:  5'- -----cCGCgCCCCCCGCCCCUUGGu- -3'
miRNA:   3'- auuuuuGUG-GGGGGGCGGGGAGCUcc -5'
2004 3' -57.5 NC_001347.2 + 230015 1.09 0.00351
Target:  5'- cUAAAAACACCCCCCCGCCCCUCGAGGa -3'
miRNA:   3'- -AUUUUUGUGGGGGGGCGGGGAGCUCC- -5'
2004 3' -57.5 NC_001347.2 + 536 1.09 0.00351
Target:  5'- cUAAAAACACCCCCCCGCCCCUCGAGGa -3'
miRNA:   3'- -AUUUUUGUGGGGGGGCGGGGAGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.