Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2004 | 3' | -57.5 | NC_001347.2 | + | 536 | 1.09 | 0.00351 |
Target: 5'- cUAAAAACACCCCCCCGCCCCUCGAGGa -3' miRNA: 3'- -AUUUUUGUGGGGGGGCGGGGAGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 901 | 0.75 | 0.459825 |
Target: 5'- -----cCGCgCCCCCCGCCCCUUGGu- -3' miRNA: 3'- auuuuuGUG-GGGGGGCGGGGAGCUcc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 23262 | 0.68 | 0.85726 |
Target: 5'- --uGGGCGCCcccaCCCCCGCgaCCCUCGcgcGGa -3' miRNA: 3'- auuUUUGUGG----GGGGGCG--GGGAGCu--CC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 39482 | 0.66 | 0.926698 |
Target: 5'- --cGAAgGCCCUCCgGCCCCgCGGc- -3' miRNA: 3'- auuUUUgUGGGGGGgCGGGGaGCUcc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 40386 | 0.66 | 0.931715 |
Target: 5'- -cAAAACACCgCCggugcggggCCGCguggugggUCCUCGAGGg -3' miRNA: 3'- auUUUUGUGGgGG---------GGCG--------GGGAGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 59222 | 0.66 | 0.933659 |
Target: 5'- aUAAGAACACCCCCUucugcacacccaacgUGCagaCUCGGcGGg -3' miRNA: 3'- -AUUUUUGUGGGGGG---------------GCGgg-GAGCU-CC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 65390 | 0.69 | 0.817845 |
Target: 5'- --uGAGCACCgCUgCCGCgCC-CGAGGg -3' miRNA: 3'- auuUUUGUGG-GGgGGCGgGGaGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 66219 | 0.67 | 0.891985 |
Target: 5'- ---cAACACCa-CCCGCgCCUUCGuGGg -3' miRNA: 3'- auuuUUGUGGggGGGCG-GGGAGCuCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 66735 | 0.69 | 0.774537 |
Target: 5'- -----cCACCaCCgCCGCCuCCUCGAGu -3' miRNA: 3'- auuuuuGUGG-GGgGGCGG-GGAGCUCc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 75383 | 0.66 | 0.931715 |
Target: 5'- cGGAuuCuCUCCCCCGCUCCaagCGGGa -3' miRNA: 3'- aUUUuuGuGGGGGGGCGGGGa--GCUCc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 79676 | 0.66 | 0.916003 |
Target: 5'- ----cGCGCUCUaCCUGCUCUUUGAGGa -3' miRNA: 3'- auuuuUGUGGGG-GGGCGGGGAGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 80209 | 0.67 | 0.878701 |
Target: 5'- cGAGcGCACCCaCUCgucgCGCUCCUCGAGc -3' miRNA: 3'- aUUUuUGUGGG-GGG----GCGGGGAGCUCc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 80269 | 0.66 | 0.931715 |
Target: 5'- aGGAGACACCgUCgCCGUgCCCgaaGAGGa -3' miRNA: 3'- aUUUUUGUGGgGG-GGCG-GGGag-CUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 82886 | 0.69 | 0.817845 |
Target: 5'- ----cGCGCCCCCaUCGCCUCcCGAGc -3' miRNA: 3'- auuuuUGUGGGGG-GGCGGGGaGCUCc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 85814 | 0.69 | 0.792268 |
Target: 5'- aUGGAAGCGCCCag-CGCCCCgacgUGGGGu -3' miRNA: 3'- -AUUUUUGUGGGgggGCGGGGa---GCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 110088 | 0.66 | 0.921461 |
Target: 5'- --cAGGCAUCgUCCUCGCCCggUGAGGg -3' miRNA: 3'- auuUUUGUGG-GGGGGCGGGgaGCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 113041 | 0.66 | 0.926698 |
Target: 5'- --uGGACGCCgCCUCUGCCggCUcCGAGGg -3' miRNA: 3'- auuUUUGUGG-GGGGGCGGg-GA-GCUCC- -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 114096 | 0.68 | 0.864603 |
Target: 5'- cGAAGAgaACCCCgCCGUCCCgCGGGu -3' miRNA: 3'- aUUUUUg-UGGGGgGGCGGGGaGCUCc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 114706 | 0.66 | 0.904427 |
Target: 5'- aAGAuGCGCauuaCCCCCGaCgCCUUCGAGa -3' miRNA: 3'- aUUUuUGUGg---GGGGGC-G-GGGAGCUCc -5' |
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2004 | 3' | -57.5 | NC_001347.2 | + | 118066 | 0.67 | 0.878701 |
Target: 5'- ---cAGCGCCUCCgCCucggacacgcGCCCUUCGAGa -3' miRNA: 3'- auuuUUGUGGGGG-GG----------CGGGGAGCUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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