miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20044 3' -58.9 NC_004687.1 + 64907 0.66 0.818086
Target:  5'- --uCGGCGcgGcGCGGGCCCaGcCGAUCa -3'
miRNA:   3'- auuGCCGCa-C-CGUCUGGGcC-GCUAGc -5'
20044 3' -58.9 NC_004687.1 + 101545 0.66 0.818086
Target:  5'- gUGGCGGacacCGguucGGCGGuCCCGGCGG-CGu -3'
miRNA:   3'- -AUUGCC----GCa---CCGUCuGGGCCGCUaGC- -5'
20044 3' -58.9 NC_004687.1 + 49605 0.66 0.818086
Target:  5'- -uGCGGuCGaaguacucGGCAGcCUCGGUGGUCGa -3'
miRNA:   3'- auUGCC-GCa-------CCGUCuGGGCCGCUAGC- -5'
20044 3' -58.9 NC_004687.1 + 67990 0.66 0.818086
Target:  5'- cGACGGCG-GGCcGACCac-CGAUCa -3'
miRNA:   3'- aUUGCCGCaCCGuCUGGgccGCUAGc -5'
20044 3' -58.9 NC_004687.1 + 140341 0.66 0.818086
Target:  5'- cAACGGCcuGUGGCAGgucGCCuCGGgcucgUGGUCGc -3'
miRNA:   3'- aUUGCCG--CACCGUC---UGG-GCC-----GCUAGC- -5'
20044 3' -58.9 NC_004687.1 + 153563 0.66 0.817241
Target:  5'- cUGGCGGCGcUGGCcGACCugcgcaacgauagCGGUGA-CGa -3'
miRNA:   3'- -AUUGCCGC-ACCGuCUGG-------------GCCGCUaGC- -5'
20044 3' -58.9 NC_004687.1 + 117529 0.66 0.809562
Target:  5'- ---gGGCGccccGGguGGCCCaGGCGGUgGg -3'
miRNA:   3'- auugCCGCa---CCguCUGGG-CCGCUAgC- -5'
20044 3' -58.9 NC_004687.1 + 137822 0.66 0.809562
Target:  5'- ---gGGCGaacucGGUcaGGGCCCGGCGGgccUCGa -3'
miRNA:   3'- auugCCGCa----CCG--UCUGGGCCGCU---AGC- -5'
20044 3' -58.9 NC_004687.1 + 88606 0.66 0.809562
Target:  5'- cAACGGCGUGcGCAGcgucaaCUGGCucUCGu -3'
miRNA:   3'- aUUGCCGCAC-CGUCug----GGCCGcuAGC- -5'
20044 3' -58.9 NC_004687.1 + 82038 0.66 0.809562
Target:  5'- cGGCGGUagcgGUGGCAGcgcgUCCGGCGGc-- -3'
miRNA:   3'- aUUGCCG----CACCGUCu---GGGCCGCUagc -5'
20044 3' -58.9 NC_004687.1 + 23428 0.66 0.809562
Target:  5'- -cACGGCGcgGGCaAGACUgGGUGAa-- -3'
miRNA:   3'- auUGCCGCa-CCG-UCUGGgCCGCUagc -5'
20044 3' -58.9 NC_004687.1 + 106903 0.66 0.800883
Target:  5'- gGGCGGCaUGGguGGCgCCggGGCGggCGc -3'
miRNA:   3'- aUUGCCGcACCguCUG-GG--CCGCuaGC- -5'
20044 3' -58.9 NC_004687.1 + 24797 0.66 0.800883
Target:  5'- --cCGGUG-GGCAGACCCacgccuucGGUG-UCGg -3'
miRNA:   3'- auuGCCGCaCCGUCUGGG--------CCGCuAGC- -5'
20044 3' -58.9 NC_004687.1 + 134936 0.66 0.800883
Target:  5'- cGACGcCGUaGGCggAGugCUGGCGGUCu -3'
miRNA:   3'- aUUGCcGCA-CCG--UCugGGCCGCUAGc -5'
20044 3' -58.9 NC_004687.1 + 44207 0.66 0.800883
Target:  5'- --cCGGCaaGGCGGGaCCGGCGcUCGa -3'
miRNA:   3'- auuGCCGcaCCGUCUgGGCCGCuAGC- -5'
20044 3' -58.9 NC_004687.1 + 43240 0.66 0.800007
Target:  5'- cAugGGUGcGGCAGagcagauGCUCGGCGG-CGg -3'
miRNA:   3'- aUugCCGCaCCGUC-------UGGGCCGCUaGC- -5'
20044 3' -58.9 NC_004687.1 + 53463 0.66 0.798251
Target:  5'- cGACGGCGaGGUcuucaaggucgucgAGACCCgugacGGCGAgCGg -3'
miRNA:   3'- aUUGCCGCaCCG--------------UCUGGG-----CCGCUaGC- -5'
20044 3' -58.9 NC_004687.1 + 14269 0.66 0.792058
Target:  5'- gUGGCGGUgGUGGCGGugUCaG-GAUCGa -3'
miRNA:   3'- -AUUGCCG-CACCGUCugGGcCgCUAGC- -5'
20044 3' -58.9 NC_004687.1 + 97358 0.66 0.792058
Target:  5'- cGGCGGgGUguugGGCGGACCCGGaagcucCGg -3'
miRNA:   3'- aUUGCCgCA----CCGUCUGGGCCgcua--GC- -5'
20044 3' -58.9 NC_004687.1 + 155321 0.66 0.786696
Target:  5'- aUGAUGGCGcUGGUGGcCCUGGUgcugagccugccgccGAUCGa -3'
miRNA:   3'- -AUUGCCGC-ACCGUCuGGGCCG---------------CUAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.