miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20044 3' -58.9 NC_004687.1 + 26217 1.07 0.002152
Target:  5'- gUAACGGCGUGGCAGACCCGGCGAUCGa -3'
miRNA:   3'- -AUUGCCGCACCGUCUGGGCCGCUAGC- -5'
20044 3' -58.9 NC_004687.1 + 135045 0.78 0.203124
Target:  5'- cAACGGCGUccucgacgcgGGCcaGGGCCCGGCGcgCGg -3'
miRNA:   3'- aUUGCCGCA----------CCG--UCUGGGCCGCuaGC- -5'
20044 3' -58.9 NC_004687.1 + 73933 0.76 0.257807
Target:  5'- -cGCGGCcaGGCGGugaACCCGGCGAUCc -3'
miRNA:   3'- auUGCCGcaCCGUC---UGGGCCGCUAGc -5'
20044 3' -58.9 NC_004687.1 + 562 0.76 0.270094
Target:  5'- gGGCGGgGUgGGCAGuCCCGGauCGAUCGg -3'
miRNA:   3'- aUUGCCgCA-CCGUCuGGGCC--GCUAGC- -5'
20044 3' -58.9 NC_004687.1 + 6073 0.76 0.276412
Target:  5'- cGACGGCGaucUGGCGGGCCCgacgGGCGuacUCGg -3'
miRNA:   3'- aUUGCCGC---ACCGUCUGGG----CCGCu--AGC- -5'
20044 3' -58.9 NC_004687.1 + 125734 0.75 0.316805
Target:  5'- cUGACGGCG-GGCGucagcaccGACcaCCGGCGGUCGa -3'
miRNA:   3'- -AUUGCCGCaCCGU--------CUG--GGCCGCUAGC- -5'
20044 3' -58.9 NC_004687.1 + 94201 0.75 0.323234
Target:  5'- cGugGGCGUGGC--GCCCGGCgcguucuGAUCGu -3'
miRNA:   3'- aUugCCGCACCGucUGGGCCG-------CUAGC- -5'
20044 3' -58.9 NC_004687.1 + 73754 0.75 0.323954
Target:  5'- aUGAcCGGCGgcaGCGGGCCCGGCGGcuacUCGa -3'
miRNA:   3'- -AUU-GCCGCac-CGUCUGGGCCGCU----AGC- -5'
20044 3' -58.9 NC_004687.1 + 47661 0.74 0.345363
Target:  5'- ---gGGUGUGGUagagcccAGACCCGGCGGugUCGg -3'
miRNA:   3'- auugCCGCACCG-------UCUGGGCCGCU--AGC- -5'
20044 3' -58.9 NC_004687.1 + 64228 0.73 0.410373
Target:  5'- --uCGGCcaGGUAGGCCUGGCGAUgGa -3'
miRNA:   3'- auuGCCGcaCCGUCUGGGCCGCUAgC- -5'
20044 3' -58.9 NC_004687.1 + 118159 0.73 0.418053
Target:  5'- cAGCGGC-UGGCGGAUCUuaggcauGGCGAUCu -3'
miRNA:   3'- aUUGCCGcACCGUCUGGG-------CCGCUAGc -5'
20044 3' -58.9 NC_004687.1 + 126928 0.72 0.435427
Target:  5'- -cGCGGCGUGGUugagcauGGGCCCGuGCgGGUCc -3'
miRNA:   3'- auUGCCGCACCG-------UCUGGGC-CG-CUAGc -5'
20044 3' -58.9 NC_004687.1 + 111562 0.72 0.435427
Target:  5'- gGGCGGCG-GuGCGGAagugcacUCCGGCGGUCa -3'
miRNA:   3'- aUUGCCGCaC-CGUCU-------GGGCCGCUAGc -5'
20044 3' -58.9 NC_004687.1 + 2013 0.72 0.436307
Target:  5'- --uUGGUGUGGCGGACggaaUGGUGGUCGc -3'
miRNA:   3'- auuGCCGCACCGUCUGg---GCCGCUAGC- -5'
20044 3' -58.9 NC_004687.1 + 3283 0.72 0.44516
Target:  5'- cGGCGGUGUaGuuGGACCCGGUGAcaUCGa -3'
miRNA:   3'- aUUGCCGCA-CcgUCUGGGCCGCU--AGC- -5'
20044 3' -58.9 NC_004687.1 + 132385 0.72 0.44516
Target:  5'- cGAUGGUGgucGGCuGGACCaCGGUGGUCGu -3'
miRNA:   3'- aUUGCCGCa--CCG-UCUGG-GCCGCUAGC- -5'
20044 3' -58.9 NC_004687.1 + 101744 0.72 0.454112
Target:  5'- cAGCGGCcUGGguGGCCCcagcaGCGAUCa -3'
miRNA:   3'- aUUGCCGcACCguCUGGGc----CGCUAGc -5'
20044 3' -58.9 NC_004687.1 + 75875 0.72 0.46316
Target:  5'- aUGACGGCGgguucgcgcaUGGUGGcCCCGGCGuugCGg -3'
miRNA:   3'- -AUUGCCGC----------ACCGUCuGGGCCGCua-GC- -5'
20044 3' -58.9 NC_004687.1 + 140610 0.72 0.472303
Target:  5'- gUGGCGGUGU-GCAGGuggucUCCGGCGGUCu -3'
miRNA:   3'- -AUUGCCGCAcCGUCU-----GGGCCGCUAGc -5'
20044 3' -58.9 NC_004687.1 + 16110 0.71 0.480609
Target:  5'- aGGCGGCGgucGGCAacgccguGACCaccgaGGCGAUCa -3'
miRNA:   3'- aUUGCCGCa--CCGU-------CUGGg----CCGCUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.