miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20044 5' -57.2 NC_004687.1 + 15722 0.66 0.864906
Target:  5'- ---cGUCGCCGaGGCCaacgGCugGACCCgCCGg -3'
miRNA:   3'- uagaUAGUGGC-CCGGa---UG--UUGGG-GGC- -5'
20044 5' -57.2 NC_004687.1 + 71810 0.66 0.864906
Target:  5'- -cCUG--GCCGGGCUgaucucGCAggGCCCCCGn -3'
miRNA:   3'- uaGAUagUGGCCCGGa-----UGU--UGGGGGC- -5'
20044 5' -57.2 NC_004687.1 + 42098 0.66 0.864906
Target:  5'- ------aGCUGGGCCUugAGCCCguCCGc -3'
miRNA:   3'- uagauagUGGCCCGGAugUUGGG--GGC- -5'
20044 5' -57.2 NC_004687.1 + 75402 0.66 0.857312
Target:  5'- cUCUG-CACCGGcGCg-GCAGCCgCCGc -3'
miRNA:   3'- uAGAUaGUGGCC-CGgaUGUUGGgGGC- -5'
20044 5' -57.2 NC_004687.1 + 121227 0.66 0.856541
Target:  5'- gAUCUGggacgcgcagcucUCGCUGGGUCUGCAcggcaccggucACCCgCUGg -3'
miRNA:   3'- -UAGAU-------------AGUGGCCCGGAUGU-----------UGGG-GGC- -5'
20044 5' -57.2 NC_004687.1 + 148151 0.66 0.849516
Target:  5'- gGUUgcgCACCGuGGCCUGgAACUCCUc -3'
miRNA:   3'- -UAGauaGUGGC-CCGGAUgUUGGGGGc -5'
20044 5' -57.2 NC_004687.1 + 4856 0.66 0.849516
Target:  5'- --gUAUCGCaGGGCCUG-GACCUCCa -3'
miRNA:   3'- uagAUAGUGgCCCGGAUgUUGGGGGc -5'
20044 5' -57.2 NC_004687.1 + 120870 0.66 0.841524
Target:  5'- -aCUGccCGCCGcGCCUGCGGCUgCCGg -3'
miRNA:   3'- uaGAUa-GUGGCcCGGAUGUUGGgGGC- -5'
20044 5' -57.2 NC_004687.1 + 135535 0.66 0.841524
Target:  5'- gGUCUGggCGCCGauGGCCUACcgcuGgCCCUGg -3'
miRNA:   3'- -UAGAUa-GUGGC--CCGGAUGu---UgGGGGC- -5'
20044 5' -57.2 NC_004687.1 + 14360 0.66 0.841524
Target:  5'- cUCUGUCACCGG--CUAC--UCCCCGa -3'
miRNA:   3'- uAGAUAGUGGCCcgGAUGuuGGGGGC- -5'
20044 5' -57.2 NC_004687.1 + 91161 0.66 0.840715
Target:  5'- ---cGUCACC-GGCCUGCAugccaaaGCCCCa- -3'
miRNA:   3'- uagaUAGUGGcCCGGAUGU-------UGGGGgc -5'
20044 5' -57.2 NC_004687.1 + 9306 0.66 0.833344
Target:  5'- cGUUgggCACCGGcGCCUcgGCGAUCUCCa -3'
miRNA:   3'- -UAGauaGUGGCC-CGGA--UGUUGGGGGc -5'
20044 5' -57.2 NC_004687.1 + 22027 0.66 0.833344
Target:  5'- -----gCGuCCGGGCCUGCAGCUCUgGc -3'
miRNA:   3'- uagauaGU-GGCCCGGAUGUUGGGGgC- -5'
20044 5' -57.2 NC_004687.1 + 101557 0.67 0.824983
Target:  5'- -----cCugCGcGGCCUGgGACUCCCGg -3'
miRNA:   3'- uagauaGugGC-CCGGAUgUUGGGGGC- -5'
20044 5' -57.2 NC_004687.1 + 125393 0.67 0.824983
Target:  5'- gAUCU-UUugCGGaCCUACAGCCgCCGu -3'
miRNA:   3'- -UAGAuAGugGCCcGGAUGUUGGgGGC- -5'
20044 5' -57.2 NC_004687.1 + 87735 0.67 0.824983
Target:  5'- --aUGUCGCUGGGCCcGCAGCUgggcgccgacgCCUGg -3'
miRNA:   3'- uagAUAGUGGCCCGGaUGUUGG-----------GGGC- -5'
20044 5' -57.2 NC_004687.1 + 144513 0.67 0.816447
Target:  5'- -gUUGUCGCCGGuccaCUGCAACgCCUCGa -3'
miRNA:   3'- uaGAUAGUGGCCcg--GAUGUUG-GGGGC- -5'
20044 5' -57.2 NC_004687.1 + 88986 0.67 0.816447
Target:  5'- gAUCUA-C-CCGGGCCaACAGCUgcgcauCCCGg -3'
miRNA:   3'- -UAGAUaGuGGCCCGGaUGUUGG------GGGC- -5'
20044 5' -57.2 NC_004687.1 + 7339 0.67 0.816447
Target:  5'- aGUCUG-CACCGGGCCg--AugUCCUGc -3'
miRNA:   3'- -UAGAUaGUGGCCCGGaugUugGGGGC- -5'
20044 5' -57.2 NC_004687.1 + 62565 0.67 0.798887
Target:  5'- -aCUAUCACCGGcCUUGCG-CUUCCGg -3'
miRNA:   3'- uaGAUAGUGGCCcGGAUGUuGGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.